Candidatus Campylobacter infans: CINF_1019
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Entry
CINF_1019 CDS
T07502
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cinf
Candidatus Campylobacter infans
Pathway
cinf03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cinf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CINF_1019 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cinf03400
]
CINF_1019 (mfd)
Enzymes [BR:
cinf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CINF_1019 (mfd)
DNA repair and recombination proteins [BR:
cinf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CINF_1019 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CarD_TRCF_RID
TRCF
UvrB_inter
ResIII
SNF2-rel_dom
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QLI05524
UniProt:
A0A7H9CMS1
LinkDB
All DBs
Position
complement(1011949..1015077)
Genome browser
AA seq
1042 aa
AA seq
DB search
MQARIYEYLSAFNEKLKEFLPEIIIFNDNKEVALGKDAAIYAGFECFCLPEFIAKRGDDL
RSFSSELFKISEVLGAFYKSKNPKKLILSPFNTLLHTLPTKDHLQGITLKKKQKIINSCL
KDELMLLGYNLVDIVQDKGEARISGEIIDIFSIDSQRPVRILLDFDEIESIKIFDEATQK
ASTDELDFAYIAPFLARLNQAEFEQVNSQINALSSDALIKDLHSFGFWYISGFKDYLSEF
SFVFASECDFALLDEYGIDIQNFALNLASNNKKLNGAHLELKSLDLNQNFTTNTPENLKF
NQQILSDLKFPLITQPKIYKDLQTTPTQSFFAFHNDKNIKILSLNESSFRALNLSEYKNI
KLELSPLILNLISSDEIIISLNQPLAKRRIKKASIIINELNAGDFVVHEHYGIGKFAGLE
LTRVLGVQKECVVINYAGGDRLLLPVEHLGLIERYIASSGAVVNVDKLGKASFIKLKEKV
REKLFAIANAIIALAAKRELISAPKLKPCELYDKFVLDAGFIYTQDQQNAIEAILADLAS
GRAMDRLLSGDVGFGKTEVAMNALFVCARAGYQGLFFVPTTLLCAQHFASLKARFAPFNI
EIYRLDRFSQPKQKAQIKAKLENGENIIVIGTHALLGINPSKLGLIIIDEEHKFGVKQKE
KLKQLCEHSHILAMSATPIPRSLNMALSQVKGYSILSTPPASRLDVRTFVKKYDEILIKE
AIMRELRRKGQLFFVHNLIADLERVKADLKAIVPNIRILCLHGKMDAKSVEDEMIKFANL
EYDILLSTSIVESGIHLPNVNTILVDNAARFGIADLHQLRGRVGRGEKQGYCYFLVGENE
NLSDEAKKRLIALESNSFLGSGALLAYHDLEIRGGGNLLGQAQSGHIEAIGYSLYLKMLE
SEINRCLSIKNASCYEDENSQNNVDLRLSINAFINSELVSSDRVRLELYRRLSKCENSAS
VYEIGAEIEERFGRLDVYTKQFLDLMVIKILASLKGYKAISNHTSTIALTPNKGEKIIIK
SKSFDDDDILDTILKFLRKGDK
NT seq
3129 nt
NT seq
+upstream
nt +downstream
nt
atgcaagctaggatctatgaatatttaagcgcttttaatgaaaaattaaaagagtttttg
ccagaaattattatttttaatgataataaagaagtagcccttggcaaagatgcggccatt
tatgcgggctttgaatgcttttgtttgcctgagtttatagccaaaagaggcgatgattta
cgctcgttttcaagcgaattatttaaaattagcgaggttttaggtgcgttttataaaagc
aaaaatcctaaaaagctgattttatcgccttttaataccttgcttcataccttacccaca
aaagatcacctacaaggcatcacacttaaaaaaaagcaaaaaataatcaattcttgccta
aaagatgagcttatgctacttggttataatttagtagatatagtccaagataaaggcgag
gcgcgcattagcggtgaaattatcgatatttttagcattgatagccaaaggccggttaga
attttgcttgattttgatgagattgaaagcattaaaatttttgatgaagccacgcaaaaa
gctagcacagatgagcttgattttgcttatatcgcgccatttttagctagattaaatcag
gctgagtttgagcaagtaaatagccaaataaacgcacttagtagtgatgctttgattaaa
gatttacattcttttggcttttggtatattagcgggtttaaggattatttaagtgaattt
tcttttgtttttgctagtgagtgcgattttgctttattagatgaatatggcatagatatt
caaaatttcgcccttaatctagctagcaataataaaaagctaaatggggcgcacttagag
ctaaaaagcctagatttaaatcaaaatttcaccaccaacacaccagaaaatttaaaattt
aatcaacaaattttaagcgatttaaaatttcccctaatcactcagccaaaaatttataaa
gatttacaaacaacgccaacgcaaagcttttttgcctttcataatgataaaaatattaaa
attttaagtttaaatgaaagttcgtttagggcgttaaatttaagcgaatacaaaaacata
aaattagagctaagccctttaattttaaatcttataagtagcgatgaaatcatcatctcg
ctaaatcagcccttagcaaaacggcgcataaaaaaagcaagtattattataaatgagcta
aatgctggggattttgtagttcatgagcattatggtataggcaaatttgctggcttagag
cttacgcgcgtgctaggcgtgcaaaaagaatgcgtggtgataaattatgctggcggggat
agattgcttttgcctgtggagcatttggggctaattgagcgctacattgcaagtagcggt
gctgtggtaaatgtggataaattaggcaaggcaagctttataaaacttaaagaaaaggtg
cgagaaaagctttttgccatagcaaatgccatcatcgccttagcagctaagcgcgagcta
ataagcgcgccaaagctaaaaccttgcgagctttatgataagtttgtgctagatgctggc
tttatttacacccaagatcagcaaaatgccatagaggcgattttagccgatttagcaagc
gggcgcgctatggatagattgcttagtggtgatgtgggttttggcaaaacagaagtggcg
atgaatgctttgtttgtgtgcgcgcgcgctgggtatcagggcttattttttgtgcctact
accttgctttgtgctcagcattttgctagcttaaaggctagatttgcgccttttaatatt
gaaatttaccgccttgatagatttagccagccaaaacaaaaagcacaaattaaagcaaaa
cttgaaaatggcgaaaatatcatagtaattggcacgcacgcacttttgggcataaatcca
tctaagcttggcttaatcatcattgatgaagagcataaatttggcgttaagcaaaaagaa
aaattaaaacaattatgcgaacattcccatatccttgcgatgtcggctacgcctatacca
agaagcttgaatatggcgctttcgcaagttaaaggatatagcattttaagcacgccacca
gctagtaggctagatgtgcgaacctttgttaaaaaatacgatgaaattttaataaaagaa
gccattatgcgagagcttaggcgtaagggacagctgttttttgtgcataatttaatagct
gatttagagcgcgttaaagcagatcttaaagccatcgtgccaaatattcgcattttgtgc
ttgcatggcaagatggatgctaagagcgtagaagatgaaatgataaaatttgctaattta
gaatatgatattttattaagcactagcatagtagaaagtggcatacatttgccaaatgtc
aatacaatcttagtagataatgcggcgcgctttggcatagcggatttacaccagttgcgc
ggtcgcgtaggcaggggagaaaaacaggggtattgttattttttagtaggtgaaaatgaa
aatttaagcgatgaagccaaaaagcgtttaattgcgcttgaaagtaattcatttttaggt
tctggcgcgcttttggcttatcatgatttagaaattagaggcgggggcaatttattgggt
caagcacaaagcgggcatattgaggctattggatatagtttgtatttaaaaatgcttgaa
agcgagataaatcgttgtttgagtattaaaaacgctagctgctatgaggatgaaaattca
caaaataatgtagatttacgccttagcataaatgcttttataaatagcgagctagttagt
agtgatagggtgcgcttagagctttaccgcaggcttagtaaatgcgaaaatagtgctagt
gtgtatgaaataggcgcagaaatcgaagaacgctttggcaggcttgatgtttatactaag
caatttttagatttgatggtaattaaaattttagcatcactaaaaggctataaagccata
agtaaccacacctcaaccatcgcccttacgccaaataaaggcgaaaaaatcataataaaa
tcaaaaagttttgatgatgacgatatactagatacaattttaaaatttctacgcaagggg
gataaatga
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