Clostridium intestinale: HZF06_02805
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Entry
HZF06_02805 CDS
T08934
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
cint
Clostridium intestinale
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
cint03009
]
HZF06_02805 (rlmD)
Enzymes [BR:
cint01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
HZF06_02805 (rlmD)
Ribosome biogenesis [BR:
cint03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
HZF06_02805 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRAM
Methyltransf_25
Cons_hypoth95
Methyltransf_15
PrmA
Methyltransf_11
MTS
Methyltransf_4
TRM5-TYW2_MTfase
Methyltransf_12
Ubie_methyltran
FtsJ
PCMT
N6_N4_Mtase
TPMT
Methyltransf_23
Motif
Other DBs
NCBI-ProteinID:
QLY80530
UniProt:
A0A7D6VUS7
LinkDB
All DBs
Position
598226..599605
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AA seq
459 aa
AA seq
DB search
MVEKNKEYVLDIISQGYEGEGIAKIGSYPIFIEGALKNEKVKVKIVKTKKTYAYGKLLEI
IDESPEREIPVCGIYEKCGGCRLQHASYKAQIDFKEERVKDCITKIGKLDENIVLRPIGM
ENPFRYRNKVQLPIGSVNGELKIGFYAPRSHDIIDLKTCHIQDEIGDKVVELTKKWMKKY
NITPATVDGRYNPKGIMRHIMIRKGFKTGEVMIVPVTNSTELPYKKEFIELMTNNIEGIT
SIVQNINDKETNVILGMKSRTIWGKDTITDYIGDFRFNISPLSFFQVNPTQTEVLYSKAL
EFAGLTGEETVFDAYCGTGTITLFLSQKAKKVYGVEIVPQAIDDAWKNAEANKVDNVEFF
VGEAEEVIPDLITKGIKADVVVVDPPRKGCEKALLEAITSINPKRIVYVSCDPSTLARDL
NILDGLGYKTEKVQPVDMFPQTAHIETVVLMTNSDPKGK
NT seq
1380 nt
NT seq
+upstream
nt +downstream
nt
ttggttgaaaagaataaagaatatgttttagatataatttctcaaggatatgaaggggaa
ggaatagctaagattggtagctatccaatatttatagagggtgcattaaagaacgaaaaa
gttaaagttaaaatagtaaaaacaaaaaagacatatgcatatgggaagcttttagaaata
atagacgaatctccagaaagagaaattcctgtgtgtggaatatatgaaaagtgtggaggt
tgtaggcttcaacatgcaagctacaaggctcagatagattttaaagaggaaagagttaag
gattgtataactaagataggaaaattagatgaaaatatagttctaaggcctattggaatg
gagaatccgtttagatacagaaataaggttcaattgcctataggctcagttaatggagag
cttaagataggtttttatgcgcctagaagccatgatattattgatttaaagacttgtcat
attcaagatgagattggggataaggttgtagaactaactaaaaagtggatgaagaaatac
aacataaccccagctacagtagatggaagatataatcctaaaggtatcatgagacatatt
atgataagaaagggatttaaaactggagaggtgatgatagttccagttacaaactccact
gagcttccatataaaaaagagtttatagaactcatgacaaataatatagaaggaataact
tctatagttcaaaatataaatgacaaagaaaccaacgtaatacttgggatgaagtctaga
actatttggggaaaggacacaataactgattatataggagactttagatttaatatatct
ccattatcattttttcaagtaaatccaacacaaacagaagtgctttattctaaggcttta
gagtttgctggccttactggggaggaaactgtatttgatgcatattgcggtactggaaca
ataacactatttctatcacaaaaagctaaaaaagtttatggggttgaaatagtaccacaa
gccatagatgatgcatggaaaaacgcagaagcaaataaggtggataatgtagagtttttt
gtaggagaggcagaagaggtaataccagaccttataaccaaaggaataaaagcagatgtt
gtagttgtggatccaccaagaaaaggctgtgagaaagctttacttgaagcaataacatct
attaatcctaaaagaattgtatatgtatcttgtgatccaagtaccttggctagggattta
aatattttagatgggcttggatataaaactgagaaggttcagcctgtggatatgtttcct
cagacggctcatattgagacagtagtattgatgacaaatagtgatccaaaagggaaataa
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