Clostridium intestinale: HZF06_05140
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Entry
HZF06_05140 CDS
T08934
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
cint
Clostridium intestinale
Pathway
cint02020
Two-component system
cint02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HZF06_05140
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HZF06_05140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cint03021
]
HZF06_05140
Transcription machinery [BR:
cint03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HZF06_05140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
HTH_23
HTH_11
Sigma70_r4_2
HTH_12
Sigma70_r4
Fe_dep_repress
HTH_36
HTH_24
HTH_21
HTH_Crp_2
HTH_17
HTH_20
HTH_Tnp_Tc3_2
MarR_2
MarR
UPF0122
HTH_IclR
GerE
HTH_5
HTH_38
HTH_AraC
HTH_Tnp_ISL3
DUF2097
Motif
Other DBs
NCBI-ProteinID:
QLY82281
UniProt:
A0A7D6ZJW3
LinkDB
All DBs
Position
1098090..1099457
Genome browser
AA seq
455 aa
AA seq
DB search
MNFNMTLTQEQKLVMTQQMQLSIKLLQMSSSELLEYINKEFAENPVIETNYEKDLEEVKI
QDRYDYKEMIKYFESDNYGSQSYGSYDEDEVSPFTFISAQKSLKDFLIEQIIDLNIDEFH
KSLCIYIAESLDNKGYLDISTQDISKELKVPLDTVEKALKTLQSLEPDGIGARDLKECLT
IQLEKQYFDDENLFEIIENHLEDIADNRYNQIAKALNITPKEAQEYGDIIKELEPKPSRG
FYTGDDVKFIIPDATIRKIDGEYFILMNDDVLPKLSINSMYKEILNNSKDAFATDYVKQK
INGAMFLIKSIEQRKSTLYRVLEKILEKQMDYFEKGESYLKPMTLKEIAEELSIHESTVS
RAIKEKFILTYRGTVKIKNLFTTGLTVTDGGEDTNILNIKNEIKSLVDKENKEKPISDQV
ICNELNNKGYNISRRTVAKYREEMGIKSSSKRKRF
NT seq
1368 nt
NT seq
+upstream
nt +downstream
nt
atgaattttaatatgactctaactcaagagcaaaagcttgttatgacacagcagatgcaa
ctttcaattaagctcttacagatgtcatcaagtgaattattagagtatataaataaagaa
tttgcagaaaacccagttattgaaaccaattatgaaaaggatttagaagaagtaaaaata
caggacagatacgattataaagaaatgataaaatactttgagtcagataactatggatct
caaagttacggtagctatgatgaagatgaggtttctccttttacattcatatcagctcaa
aaatcattaaaggactttttaattgagcagattatagacttaaacatagatgaattccac
aagagtctatgtatttatatagcagagagtttagataataaaggttatttagatatttct
acacaagacataagtaaggaattaaaagttcctttagatactgttgaaaaagctttaaaa
accctacaatctttagagccagatggaattggagctagagatttaaaagaatgtttaaca
atacaattagagaagcaatattttgatgatgaaaatctttttgaaataatagaaaatcat
ttagaagatattgcagataatagatataatcaaatagctaaagctttgaatattactcct
aaagaagctcaagagtatggggacattataaaagaacttgaacctaaaccatctagagga
ttttatacaggggatgatgtgaagtttataattcctgatgctacaattagaaagattgat
ggagaatactttatacttatgaatgatgatgttttacctaagttatcaataaactctatg
tataaagaaatattaaacaattctaaggatgcatttgcaacagactacgtaaaacaaaaa
attaatggtgcaatgtttttgataaaaagtatagagcaaaggaaaagcacattatataga
gttttagagaaaattttagagaagcaaatggattactttgaaaaaggagaaagttaccta
aaaccaatgacattaaaggaaatagctgaagagttaagcattcatgaatcaacagttagt
agagccataaaagaaaaatttattttaacctatagaggaacagttaaaataaagaattta
ttcactacagggctaacagtaacagatggtggagaagacacaaatatattaaacattaaa
aatgaaataaaaagtcttgtagataaagaaaataaagaaaaacctatatcggatcaagtt
atttgtaatgaacttaataacaaagggtataatatatctagaagaacagttgcaaaatac
agagaagaaatgggaattaagtcatcaagtaaaagaaaaagattttaa
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