Clostridium intestinale: HZF06_19590
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Entry
HZF06_19590 CDS
T08934
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cint
Clostridium intestinale
Pathway
cint03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZF06_19590 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cint03021
]
HZF06_19590 (rho)
03019 Messenger RNA biogenesis [BR:
cint03019
]
HZF06_19590 (rho)
Transcription machinery [BR:
cint03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
HZF06_19590 (rho)
Messenger RNA biogenesis [BR:
cint03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HZF06_19590 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
S1CSD-TOTE-2
NACHT
Spore_III_AA
OB_RNB
AAA
AAA_22
AAA_25
AAA_14
SAP
Motif
Other DBs
NCBI-ProteinID:
QLY79247
UniProt:
A0A7D6VNU9
LinkDB
All DBs
Position
complement(3923061..3924500)
Genome browser
AA seq
479 aa
AA seq
DB search
MSKEKYESMTLIELKEIAKELGIKNLSKKKKNEIIEDILLNSPNLIEKDGVILREKITPK
VSEPEVVKEEVKTNSTVRDNQVREPQFTERRERPRDNIGEAASDKGVLEILENNNFGFLR
CRNYLTGDNDIYISPSQIRRFNLRTGDQVEGKVREPKEGEKFRALIYVEKVNGDNPDKAV
GRKSFETLTPIYPKERLRLETGNPNDLSSRLMDIISPVGKGQRGIIVAPPKAGKTTLLKK
VAQNISGNYPDVKLIVLLIDERPEEVTDMQRSINGEVIYSTFDEEPQNHAKVAQMVLERA
KRMVEQGQDVVILLDSITRLARAYNLTINPTGRTLSGGLDPGALIMPKKFFGAARNIEEG
GSLTILATALIETGSRMDDMIFEEFKGTGNMEVHLDRRLQERRIFPAIDIYKSGTRKEDL
LLTPEEKEVAFTIRRVMYRDGNIENIAEKLINILSKTKNNKEFMAVFQKSDLDNKNTRN
NT seq
1440 nt
NT seq
+upstream
nt +downstream
nt
ttgtcaaaagaaaaatatgaaagtatgactcttattgagctgaaagaaatagctaaagag
ttaggtataaaaaatttgtctaaaaaaaagaaaaatgaaataatagaagatattctgtta
aattctccaaatttaatagaaaaggatggagttattttaagagagaaaattactcctaag
gtaagtgagccggaagttgtaaaagaagaagtgaaaactaatagtacggttagggataat
caggtaagagaaccacagtttacagagagaagagaaagacctagagataatattggagaa
gctgctagtgataaaggtgttctagagatattagaaaataataactttggttttttaaga
tgtagaaattatttaactggtgataacgacatatatatatctccatctcaaataagaaga
tttaatcttaggacaggggatcaggtagaaggtaaagtgagagaacctaaagaaggtgaa
aaattcagagctttaatatatgtagagaaggtaaacggagataatcctgacaaggctgtt
ggtagaaagtcttttgaaacactaacaccgatatatcctaaggaaaggcttagattggag
actggtaatccaaatgatttaagttcaagacttatggatattatttcaccagttggaaag
ggacaaagaggaatcattgtagctcctcctaaagctggaaaaacaacattgcttaaaaaa
gtagctcagaatatatcgggtaattatcctgatgttaaactaatagtattactaattgat
gaaagaccagaagaagtaacagatatgcaaagaagtattaatggagaggttatatactca
acttttgatgaagaacctcaaaatcatgctaaagttgcacaaatggttttagaaagagcc
aagagaatggttgagcaaggtcaggatgtagttatattgttagacagcataactagactt
gcgagagcttataatctaactataaaccctacaggaagaactttatcgggtggactagac
ccaggtgcattaataatgcctaagaagttctttggggcagcaagaaatatagaagaggga
ggaagtcttactatattagcaaccgctttaattgaaacgggaagtagaatggatgatatg
atattcgaagaatttaaaggaactggtaatatggaagttcatttagatagaagacttcaa
gaaagaagaatattcccagctatagatatatataaatctggaactagaaaagaagattta
cttttaactccagaagaaaaagaagttgcattcactattagaagagttatgtatagagat
ggtaatatagaaaatatagctgagaagcttataaatatattatctaaaacaaaaaataac
aaagagtttatggctgtattccaaaaaagcgatttagataacaaaaacactagaaattaa
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