Clostridium intestinale: HZF06_22430
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Entry
HZF06_22430 CDS
T08934
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cint
Clostridium intestinale
Pathway
cint03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cint00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HZF06_22430
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cint03019
]
HZF06_22430
03009 Ribosome biogenesis [BR:
cint03009
]
HZF06_22430
Enzymes [BR:
cint01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HZF06_22430
Messenger RNA biogenesis [BR:
cint03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HZF06_22430
Ribosome biogenesis [BR:
cint03009
]
Prokaryotic type
rRNA helicases
HZF06_22430
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_22
AAA_19
CMS1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QLY79741
UniProt:
A0A7D6ZGI3
LinkDB
All DBs
Position
complement(4469144..4470724)
Genome browser
AA seq
526 aa
AA seq
DB search
MSEINFRELGLNEDVLKAIDDMGFEEPSKIQAQVIPVLLDGFDVIGQAQTGTGKTLAFGA
PVLNNITSAGNKVKCLVLAPTRELAIQVNEELVRIAKHTRTRILPVYGGQPIDRQIKALT
RGIDIIVGTPGRVLDLMRRKVIDLRNIEFLVLDEADEMLNMGFVEDIEEIIKNTNDERQT
LLFSATMPQEIKKLAKNYMKDDAQHISIIKNAMTVSTVSQYYYEVKHSDRVESLCRILDV
DAPTAAIIFCKTKKGVDELVASMQARGYSVEGMHGDLSQNYRMNTLKKFKEGNLEFLVAT
DVAARGIDVENVTHVINYDLPQDTESYVHRIGRTGRANREGVAYTLVTPREYRALKQIER
ITNSKIKRKNIPTIDDIFEAKYNNIYSRIKETIEGEDYSKFIPLAEQIDEEFNLVQVAAA
LMHIIYNKEVSYDYSENNIGTTTSKGRYERLFVNLGRKDGMNPKSFIAFLGEGLRLKKED
IGDIDIFDKYSFIDATEEVARDIMKSCIGKRVRGRKVNIEIANSKK
NT seq
1581 nt
NT seq
+upstream
nt +downstream
nt
atgagcgaaataaattttagagaattaggattaaatgaggatgttttaaaagccatagat
gatatgggatttgaggaaccttctaaaatacaagcacaagtaatacctgtattattagat
ggatttgacgttatagggcaagcacaaacaggaactggaaagactttggcatttggagcg
ccagtacttaacaatattacttcagctggaaataaagtgaaatgtttagttttagcacca
actagagaattagctatacaagtaaatgaagagttagttagaatagctaaacacacaaga
actagaatattacctgtatatggcggtcaacctatagatagacaaattaaagccttaaca
agaggaatagacataatagttggaacaccaggaagagttttagatcttatgagaagaaaa
gtaattgatctaagaaacatagagttcctagttttagatgaagcagatgaaatgcttaat
atgggatttgttgaagatatagaagaaataataaagaatactaacgacgaaagacaaact
ttattattctcagctactatgcctcaagaaataaagaaattagctaaaaattatatgaaa
gatgatgctcaacatatatctatcataaaaaatgctatgacagtatctactgtaagccaa
tactattatgaagttaaacatagtgatagagtagaatctttatgtagaattttagatgta
gatgcaccaacagcagcaataattttctgtaagactaaaaaaggtgttgatgaattagta
gcatctatgcaagcaagaggatacagtgttgaaggtatgcatggtgatttaagccaaaac
tacagaatgaatactttaaagaaatttaaagaaggtaacttagaattcttagtagctaca
gacgttgcagctagaggaatagacgttgaaaatgtaactcatgtaattaactatgattta
ccacaagatacagaatcctacgtacatagaataggaagaactggtagagctaatagagaa
ggtgttgcatacactttagttactccaagagagtatagagccttaaagcaaatagaaaga
attacaaatagtaagataaagagaaaaaatataccaacaatagatgatatatttgaagct
aaatacaataacatatattcaagaattaaagaaactattgaaggtgaagattatagtaaa
tttatacctttagcagaacaaatagatgaagaattcaatctagtacaggttgcggctgca
cttatgcacataatctataataaagaagtttcttatgattattctgaaaataatatagga
actactacttctaaaggaagatatgaaagattatttgttaacttaggtagaaaagatgga
atgaatcctaagagctttatagcatttttaggagaaggtttaagattaaagaaagaagat
ataggcgatatagatatatttgataaatactcatttatcgatgcaacagaagaagttgca
agagacataatgaaaagttgtataggtaagagagttagaggaagaaaagtaaatattgaa
attgctaattcgaaaaaataa
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