Chryseobacterium indologenes: CEQ15_00620
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Entry
CEQ15_00620 CDS
T04932
Name
(GenBank) ATP-dependent helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cio
Chryseobacterium indologenes
Pathway
cio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ15_00620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cio03019
]
CEQ15_00620
Enzymes [BR:
cio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CEQ15_00620
Messenger RNA biogenesis [BR:
cio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ15_00620
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
UvrD-helicase
Cas3-like_C_2
P-loop_SecA
HEM4
AAA_7
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ASE60126
UniProt:
A0AAD1DX89
LinkDB
All DBs
Position
complement(138222..139532)
Genome browser
AA seq
436 aa
AA seq
DB search
MNFTDLNLIEPIAKAIKEQGYTTPTPIQERSIPDILQGRDFLGCAQTGTGKTAAFSIPIL
QNLSKNKISNNHIKALILTPTRELAIQIEENINAYGKYLPLKQLVIFGGVKQGNQEAALK
KGVDILVATPGRLLDFIAQGIISLKNLEIFVLDEADRMLDMGFVHDVKRIIKLLPQRRQT
LFFSATMPGEIQKLANSILNNPVKVEVTPVSSTADTIKQSVYFVERENKLNLLSHILKND
IADSVLVFARTKHGADKIARKLQKDNISAEAIHGNKSQNARQNALNNFKSGKTRVLVATD
IAARGIDIDELKFVINFELSDVSETYVHRIGRTGRAGAEGTSISFVDGLDLLNLKNTEKL
IGKKIPIIKDHPFHTDDLVAEKRDSNNKPVRSGGESQGPKQPSRAPKSNGNRKKKPSTAA
SVGFKKPKNKNFTRKK
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
ttgaattttacagacttaaacttaatagaacctattgccaaggcaatcaaggaacaagga
tatactactcctacccctatccaggaaagatctattcctgatattttacaagggagagat
tttttagggtgtgctcagaccggaacaggtaaaacagcagccttttctattcctatatta
cagaatttatcaaaaaataaaatttcaaacaatcatataaaagctttaattcttactcct
acgcgagaattagctattcagattgaagaaaacattaatgcatacggaaaatatcttcct
ttaaaacaacttgttatttttggaggcgtaaagcaaggcaaccaggaagctgccctgaaa
aaaggggtcgatattctggtagcaacgcctggaaggcttcttgactttattgctcaggga
atcatcagccttaaaaaccttgagatatttgttcttgatgaagcggacagaatgcttgat
atgggctttgtacatgatgtaaaaagaatcatcaagcttttaccacagagaagacaaacg
ttattcttttctgcaactatgcccggagaaattcagaaactggctaattctatccttaat
aatcctgtaaaagtagaagtaacaccggtttcttctactgcagataccatcaaacaatct
gtttatttcgtggaacgtgaaaataagctgaatctgctttctcacatcctgaaaaatgac
atcgctgattctgtacttgtatttgcaagaacaaagcacggtgcagataaaatcgcgaga
aaacttcaaaaggataatatctcggcagaggcgatacacggtaataaatctcagaatgca
agacaaaatgcactgaataatttcaagtccgggaaaaccagagttctggtagctacagat
attgctgcaaggggaattgatattgatgagctgaaattcgtgatcaattttgaactttca
gatgtttccgaaacgtatgtacacagaatcggaagaacaggaagagccggagctgaaggg
acttcaatctcttttgtggatggtcttgacctgttaaatttaaaaaatacggagaagctt
atcggaaagaaaattcctatcataaaagaccaccctttccatactgatgaccttgttgct
gagaaaagagattccaataacaaacctgtacgttcaggtggggaatcgcaaggaccaaaa
caaccttcaagagcgcctaaaagtaatggaaacaggaaaaagaaaccttctacagccgct
tccgtaggatttaaaaagcctaaaaacaaaaatttcacaagaaaaaaataa
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