Chryseobacterium indologenes: CEQ15_08095
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Entry
CEQ15_08095 CDS
T04932
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cio
Chryseobacterium indologenes
Pathway
cio03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cio00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CEQ15_08095 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cio03019
]
CEQ15_08095 (recQ)
03400 DNA repair and recombination proteins [BR:
cio03400
]
CEQ15_08095 (recQ)
Enzymes [BR:
cio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ15_08095 (recQ)
Messenger RNA biogenesis [BR:
cio03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CEQ15_08095 (recQ)
DNA repair and recombination proteins [BR:
cio03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CEQ15_08095 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RecQ-1-like_HTH
Helicase_C
RQC
HRDC
RecQ_Zn_bind
HTH_40
GARS_N
Motif
Other DBs
NCBI-ProteinID:
ASE61458
LinkDB
All DBs
Position
complement(1776688..1778892)
Genome browser
AA seq
734 aa
AA seq
DB search
MSAKKANLSGELKKYFGFSTFKGQQEQIIGNLLNGEDIFVLMPTGGGKSLCYQLPALISE
GTAIVVSPLIALMKNQVDAVNGLSSDDGVAHVLNSSLNKTQTKQVFDDIKSEKTKLLYVA
PESLIKDDYLDFLKDVKISFFAIDEAHCISEWGHDFRPEYRNLKQIIDKIANVPVIALTA
TATPKVQDDIQKTLGMTNALVFKESFNRPNLYYEVCPKVNVDKEIVKFINQHKGKSGIVY
CLSRRKVEEFAQLLQVNGINALPYHAGLDQKVRVTNQDKFLMEEVDVIVATIAFGMGIDK
PDVRFVIHYDFPKSLESYYQETGRAGRDGGEGHCLAFYDPKDIEKLEKFLAQKPVSEREI
GLQLLNEVVGYAETSMSRRQYILYYFGESFDPVNGDGAKMCDNSSNPPKLKDATADLNKA
LELISDTGEKFKAKDLISVIVGKETAVTKSYKLEQNDHFGFGKHEKDNYWKTILRQATVQ
NFLQKDIETYGVIKITEKGRAVLKGESKDKFLIAEDREFDLTQSKAESDQIQQQAGGGMD
QNLFGLLKELRKKVAKKYGIPPYTVFMDPSLEDMTVQYPITVDEITKIYGVGEGKAKKYG
KEFADYIKTYVEDNNIERTQDMVLKQVANKSSHKVFIIQSTDKKIDLEDIARAKNLSMDE
LLKEMERIVYQGTKLNIDYYIEDNFDEDIVDGFMEFMNESESDSMKVLLDEFGDELSDEE
VRMLRIKFISDVAN
NT seq
2205 nt
NT seq
+upstream
nt +downstream
nt
atgagcgcaaaaaaagccaatttatcaggcgaattgaaaaagtattttgggttttctaca
tttaagggtcagcaggaacaaatcataggaaatctcttaaatggggaagacatatttgtt
ttgatgcctacggggggtggtaaatcattatgttatcagcttcctgctcttatttcggaa
ggcacggcgatagtcgtttcacccttaatcgcgttaatgaagaatcaggtggatgcagtc
aacggcctttcatcggatgatggggtagcacatgtattaaattcatcattaaacaagaca
cagacaaaacaggtttttgacgatatcaaaagtgaaaaaacgaaacttttgtatgtagct
ccggagtcattgattaaagatgactatctggactttctgaaagatgttaagatttctttc
tttgccattgatgaggcacactgtatttcagaatggggacatgatttcagaccggaatac
agaaatttaaaacagatcatagacaagattgccaatgtaccggtgattgctttgacggca
acagcaactcctaaagttcaggatgatatccagaaaactttgggaatgaccaacgcattg
gtttttaaagaaagtttcaaccggcctaatctatattatgaggtatgtccgaaagtaaat
gtagataaagagatcgtaaaatttatcaatcagcacaagggaaagtcagggatcgtatat
tgcctgagccgcagaaaagttgaggagtttgcccagcttctgcaggtcaacggaatcaat
gcacttccttatcatgccggtcttgatcaaaaagtgagagtgaccaatcaggataaattc
ctcatggaagaagtggatgtcatcgtggcaaccattgcttttgggatgggaattgacaaa
ccagatgtacgttttgtgattcattatgattttcctaaatccctggaaagttattatcag
gaaacgggaagagcaggaagagatggaggagaaggtcattgtctggcattctatgatccg
aaagacatagagaaactagaaaagttcctggcgcaaaagcccgtttctgaaagagaaatt
ggcctgcagctcctgaacgaagtggtaggatatgccgaaacttcaatgagtcgtagacaa
tacatcctgtattattttggtgaatcttttgatcctgtcaacggtgatggggcaaagatg
tgtgataactcttcgaatcctccaaaattgaaagatgcaacagctgatctgaataaagct
ttggaactgattagtgatacaggagaaaaatttaaagccaaagacctgatttctgttatt
gttggaaaagaaacagcggtgacgaaatcatataaacttgagcaaaacgatcattttggt
tttggtaaacacgaaaaggacaattactggaagactattctcagacaggcaacggttcag
aatttcttgcagaaagatattgaaacctatggtgttataaagattactgaaaaaggaaga
gctgtactaaaaggagaatcaaaagacaaatttttaatagccgaagacagagaatttgat
cttacacagtctaaagctgaaagtgatcagatacagcagcaggcaggtggcggtatggat
cagaacctgtttggtcttttaaaagaactgaggaaaaaagtagccaagaaatatggcatc
cctccatacaccgtatttatggatcctagtttagaagatatgacggttcagtatccgatt
acggtagatgaaattaccaaaatttatggtgtaggagaaggaaaggctaaaaaatatggt
aaagaattcgctgattacattaagacctatgttgaggataacaatatagaacgtactcag
gatatggtgttgaagcaggtcgccaataaatcgagccacaaagttttcattattcagagc
accgataaaaagatcgatcttgaagatatcgcaagagccaaaaacctttcgatggatgaa
ctcctgaaggaaatggaaaggatcgtttatcagggaacaaaattgaatattgattattat
attgaagataatttcgatgaagatattgtagacggatttatggagtttatgaacgaatct
gaaagcgatagcatgaaagtattgctggatgaatttggagacgaactttctgatgaagaa
gtaagaatgctgagaattaaatttatcagcgacgtagcaaactaa
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