Chryseobacterium indologenes: CEQ15_19670
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Entry
CEQ15_19670 CDS
T04932
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
cio
Chryseobacterium indologenes
Pathway
cio03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
cio00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CEQ15_19670 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cio03400
]
CEQ15_19670 (mfd)
Enzymes [BR:
cio01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CEQ15_19670 (mfd)
DNA repair and recombination proteins [BR:
cio03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
CEQ15_19670 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
UB2H
Choline_kin_N
Motif
Other DBs
NCBI-ProteinID:
ASE63542
LinkDB
All DBs
Position
4374524..4377892
Genome browser
AA seq
1122 aa
AA seq
DB search
MQLKSINEKFLPDLMQKEFGKEIFTRLENNPHITVKGSAGSSISIFIAELFLVQKKNILY
LVDDKEDALYANTEMEDLLGKEKVLYFPATHLEPYQVEKTQNANLVLRTEVLNKINSGRS
PKVIVAYAGALSEKVLKKEDFKAISHHIKVGDQLDFDFVDELLNHYHFQQSDFVSEPGEF
SVRGGIVDVFSYSHEKPYRITFFGNEVESIKTFDIETQLSVDKVKDFQLVSNMNFSVTGS
RVSLLQLLSDESYVVSKNGMIGMQKIRTFYEKSLEKYETLSKDIAHRTPQELFISDQEFL
FDYKKFKTIDFGNVAIEGLKELVEIKMDQLPQPSFHKNFELLIEDIEEKQKNGFDTWISF
STEKQKERLESIFEELEHELPFKSFKSELHEGFVDNGHKILVYTDHQIFDRYQRYKAKNT
FAKSEQLTLKDLMSLKIGDYIAHIDHGIGKFMGLVKVNNDGKIQECFKLTYKNGDLLYVS
IHSLHKISKYNGPEGREIVLSKLGSPTWKSLKQKTKAKVKQIAFDLIRLYAERKTAKGFA
YTPDSYLQNELEASFIYEDTPDQEKATIDVKKDMEADTVMDRLVCGDVGFGKTEVAIRAA
FKAATDGKQVAVLVPTTILAFQHYRSFKERLKDFPVNVAYVNRFRTAKQKSETLEALKNG
KVDIIIGTHQLASSSVKFKDLGLLIIDEEHKFGVSVKDKLKTLKNNVDTLTLTATPIPRT
LQFSLMAARDLSVIKTPPPNRQPVDTQLIDFNEETLRDAVSYELQRDGQVYFINNRIENL
KDIAGLIQRLVPDARVITGHGQMEGKQLEKNVLDFMEGKYDVLVSTTIVESGVDVPNANT
IFINDAQRFGMADLHQMRGRVGRSNRKAFCYLITPPYDMMTSDARKRLEAIEQFSDLGSG
FQIAMKDLEIRGAGDLLGAEQSGFINEMGFETYQKLMQEALEELKDDADFESLFENEEDR
QKLFKSVKDVNIDTDLELMLPDSYISNTEERLLLYQKLSEITNEKDLHQFELELIDRFGA
LPKEAVNLLKSVSLKWLAADIGFEKIVMKNGVFLGYFPGNPQDKFYQTDRFRHIISYLTK
NPAEAQLKEKSGKEGNQLMMRKERLKNVDEVNVLLKAIIEHQ
NT seq
3369 nt
NT seq
+upstream
nt +downstream
nt
atgcagttaaaatccatcaacgaaaagtttcttccggatctcatgcaaaaggaatttgga
aaagaaatcttcacccgcttagaaaacaatccgcatattactgtgaaaggaagtgcagga
tcttcaatttctatatttatagcagaactttttctggttcagaagaaaaacatcctttat
cttgttgatgataaggaagatgcgttgtatgctaatactgaaatggaggatctgcttgga
aaagaaaaagttctctactttccggcaacccatcttgaaccctatcaggtagaaaagacg
caaaatgctaatttggttttaaggactgaagttctcaataaaatcaattccgggcgatct
ccgaaagttattgttgcctatgcaggagcgctgtctgaaaaagtattgaagaaagaagat
tttaaggcaatatcacatcatattaaggtgggagatcagttggattttgattttgttgat
gaattactgaatcattatcattttcaacaatctgattttgtatccgaacccggagaattt
tccgtaagaggaggaatcgtagacgtcttctcttattcccatgaaaaaccttacagaatt
acattttttggaaacgaagttgaaagcattaaaacctttgatatcgaaacacagctttcc
gtagataaggtgaaggattttcagttggtctcgaatatgaacttttcagtgacgggaagc
agggtttcattattacagctgttatccgatgaaagctatgtggtctctaagaacgggatg
atcggaatgcagaaaatcagaacattctatgagaagtcccttgaaaagtatgaaacatta
agtaaagatattgcccacagaactccccaggaactttttatttcagatcaggaattcctg
tttgattacaaaaaattcaaaacgatcgattttggtaatgttgccattgagggcttaaaa
gaacttgttgaaattaagatggatcagcttccacagccttctttccataaaaattttgaa
cttctgattgaagatatcgaagaaaagcagaagaacgggtttgatacctggatttcattt
tccacagagaaacaaaaagaaagactcgaatcgatctttgaagaactggaacatgagctt
ccttttaaaagctttaaatctgaactacatgaaggcttcgtagataacgggcataaaata
ctggtatatacggatcaccagatctttgaccggtatcagaggtataaagcaaaaaatact
tttgccaaatcagagcaacttactttgaaagacctgatgtctctgaagatcggagactat
attgctcacatcgatcatgggatcgggaagtttatggggctggtaaaagtaaataatgac
ggcaaaattcaggagtgttttaagctgacctataaaaacggggacttattatatgtaagt
attcattcattgcataagatctcaaaatacaatggtccggaaggacgggaaattgtactg
agtaaacttggatctcctacctggaaatctttaaaacaaaagacaaaagcaaaagtaaaa
cagattgcttttgaccttatcagactctatgctgaaagaaaaaccgctaaaggttttgcc
tacactccggattcttatctgcaaaatgagctggaagcaagctttatttacgaagatact
cccgatcaggaaaaggctaccatcgatgtgaaaaaagatatggaagcagataccgtgatg
gatagactggtgtgtggagatgtaggttttggtaaaacggaagttgcaattcgggccgct
tttaaagcagcaacagacggaaagcaagtagcagtattggttcctacgaccattttagca
tttcagcattacagaagttttaaagaaagacttaaagacttccctgtcaatgttgcttat
gtaaacaggttcagaacagctaagcaaaaatctgaaacattagaagccctgaaaaacggt
aaggtagatatcattataggaacccatcaattggccagcagctctgtcaagtttaaagat
ctgggattattgattattgatgaggaacataaatttggggtgtctgtaaaggataaactg
aaaaccttaaaaaataatgttgacactcttacgctcacagcaacacccatacctagaact
ctgcagttttcattaatggccgcacgagacctgtctgtgatcaaaacaccacctcccaac
aggcaacctgttgatactcaattgatcgattttaatgaagaaacacttcgtgatgcggtt
tcgtacgagcttcagagagatgggcaggtgtattttatcaataacagaattgaaaacctt
aaggatattgcggggctcatccagagattagttcctgatgccagggtcattaccggacac
ggtcagatggaagggaaacaactggaaaagaatgttctggattttatggaaggcaaatat
gacgttcttgtatctaccacaattgttgaaagtggggtagacgttcccaatgccaacacg
atattcatcaatgatgcgcaaagattcggtatggcagaccttcatcagatgagaggaaga
gtagggcgtagcaacagaaaagctttttgctacctgatcacacctccgtatgatatgatg
acttctgatgcaagaaaacgtctggaagctattgaacagttttcagatttaggaagtggt
ttccagattgcaatgaaagatcttgaaatccgtggtgccggtgatttgctgggcgctgag
caaagtggttttatcaatgaaatgggctttgaaacctatcagaaactgatgcaggaagca
ttggaagaactgaaagacgacgcagactttgaaagcttgtttgaaaatgaagaagacagg
caaaaattattcaaatccgtaaaagatgtcaatattgatactgatttagaattgatgctg
ccggattcatatatttccaatacggaagaaaggctacttctctatcagaagctgtcagag
attactaatgaaaaagatcttcatcagtttgagcttgaattaattgaccgtttcggggcg
ttacccaaagaagctgtaaatctcttaaaaagtgtttctttaaaatggctggcagccgat
atcggctttgaaaaaattgtgatgaaaaacggcgtctttctagggtatttcccgggcaat
cctcaggataagttctatcaaaccgatagattcaggcatatcatcagttatttgacaaaa
aaccctgcagaagcacagcttaaagaaaaatccggtaaagaaggcaatcagctgatgatg
agaaaggagagacttaaaaacgttgatgaggtcaatgtattattgaaagctataattgaa
catcaataa
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