Citrobacter sp. TBCP-5362: FD428_02730
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Entry
FD428_02730 CDS
T10692
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD428_02730
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciq03019
]
FD428_02730
03009 Ribosome biogenesis [BR:
ciq03009
]
FD428_02730
Enzymes [BR:
ciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FD428_02730
Messenger RNA biogenesis [BR:
ciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FD428_02730
Ribosome biogenesis [BR:
ciq03009
]
Prokaryotic type
rRNA helicases
FD428_02730
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
DeaD_C
ResIII
CMS1
Cas3-like_C_2
AAA_22
DRTGG
Motif
Other DBs
NCBI-ProteinID:
QCQ69971
LinkDB
All DBs
Position
560561..562459
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AA seq
632 aa
AA seq
DB search
MAEFETTFADLGLKAPILDALNDLGYEKPSPIQAECIPHLLGGRDVLGMAQTGSGKTAAF
SLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLR
ALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDVETIMAQIPEG
HQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQSYWTVWGMRKNEALVRFL
EAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQALREQTLERLKDGRLDILI
ATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAGRALLFVENRERRLLRNI
ERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQYRALLAKIQPTEEGEELD
LETLAAALLKMAQGERTLIVPPDAPMRPKREFRDRDDRGPRDRNDRGPRADRGDREDRPR
RERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLFASHSTIELPKGM
PGEVLQHFTRTRILNKPMNMQLLGDAQPHSGNERRGGGRSFGGERREGGRGFGGERREGG
RGDGRRFSGERREGRAPRRDDSTGRRRFGGDA
NT seq
1899 nt
NT seq
+upstream
nt +downstream
nt
atggctgaattcgaaaccacttttgcagatctgggcctgaaggctcctatccttgacgcc
cttaacgatctgggttacgaaaaaccatctccaatccaggcagaatgcatcccgcatctg
ctgggcggtcgcgatgttctgggtatggcccagaccggtagcggcaaaaccgcagcgttc
tccttaccgctgcttaacaatcttgatcctgagctgaaggcacctcagattctggtgctg
gcaccgacccgcgaactggcggttcaggttgctgaagccatgacggatttctctaaacat
atgcgcggcgtgaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgc
gccctgcgtcaagggccgcagatcgttgtcggtacgccgggacgtctgcttgatcactta
aaacgcggcacgctggatctctctaaactgagcggtctggtgctggacgaagccgacgaa
atgctgcgtatgggcttcatcgaagacgttgaaaccatcatggcgcagattcctgaaggt
catcagaccgcactgttctctgccaccatgccggaagcgattcgtcgcattacccgccgc
tttatgaaagagccgcaggaagtgcgcattcagtccagcgtgaccacgcgtcctgacatc
agccagagctactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctg
gaagctgaagattttgatgcggcgattatcttcgttcgtactaaaaatgcgaccctggaa
gtggctgaagcgctggagcgtagcggttacaacagcgccgcgctgaatggcgacatgaac
caggcgctgcgtgagcagactctggagcgtctgaaagacggtcgtctggatatcctgatt
gcaactgacgttgcggcccgtggcctggacgttgagcgcatcagcctggttgtaaactac
gatatcccgatggactccgagtcttacgttcaccgtatcggccgtaccggtcgtgcgggt
cgtgctggccgcgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgcaacatt
gaacgcaccatgaagctgaccatcccggaagtggaactgccgaacgcagaactgctgggc
aaacgccgtctggaaaaatttgcagcgaaagttcagcagcagctggaaagcagcgatctg
gatcagtaccgcgcgctgctggcgaaaatccagccgaccgaagaaggcgaagagctggat
ctcgaaacgctggctgccgcactgctgaaaatggcgcagggcgaacgcacgctgatcgta
ccgccggatgcgccgatgcgtcctaaacgtgaattccgtgaccgtgatgaccgtggtccg
cgcgatcgtaacgatcgtggcccgcgtgctgatcgtggtgatcgtgaagatcgcccgcgt
cgtgaacgtcgtgacgttggcgatatgcagctgtaccgcattgaagtgggccgtgatgac
ggtgttgaagtgcgtcatatcgttggcgcgattgctaacgaaggcgacatcagcagccgt
tacattggtaacatcaagctgtttgcttcccactccaccattgagctgccgaaaggtatg
ccgggtgaggtgttgcagcactttacgcgcacccgcatcctgaacaagccgatgaacatg
caactgctgggcgatgcgcaaccgcattccggtaacgagcgtcgtggcggtggtcgtagc
ttcggtggcgagcgtcgtgaaggcggtcgtggttttggcggcgaacgtcgtgaaggtggc
cgtggtgatggtcgtcgtttcagcggtgagcgtcgtgaaggccgtgcgccgcgtcgtgac
gactccaccggtcgtcgtcgtttcggcggtgatgcgtaa
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