Citrobacter sp. TBCP-5362: FD428_04295
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Entry
FD428_04295 CDS
T10692
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
FD428_04295 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_04295 (recB)
Enzymes [BR:
ciq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
FD428_04295 (recB)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FD428_04295 (recB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_11
AAA_25
Motif
Other DBs
NCBI-ProteinID:
QCQ70262
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All DBs
Position
886738..890283
Genome browser
AA seq
1181 aa
AA seq
DB search
MNDAAESLDPLRLPLTGERLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELL
VVTFTEAATEELRGRIRSNIHELRIACLRETTDNPLYARLLEEIEDKKQAAQWLLLAERQ
MDEAAVFTIHGFCQRMLSLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIA
QVVFEAWKGPRALLKDIDRYLQGEAPVIKAPPPSDETLASRHEHILSRINALKQQWCASV
DELDGVIESSGIDRRKFNRGNQTKWIEKITAWAQAETQTYQLPDALEKFSRRFLEERTKA
GGITPQHPLFVAIEELLAEPLTIKDLLITRALAEIRETVAQEKQRRGELGFDDMLSRLDV
ALRSNSGDALASAIRGRFPVAMIDEFQDTDPQQYRIFRRIWRHQPDTALLLIGDPKQAIY
AFRGADIFTYMKARSEVSAHYTLDTNWRSAPGMVNSVNTLFSQMNDAFMFREIPFAPVKS
AQKNQSLRFVLNGETQPAMNMWLMEGESCGIGDYQSYMAQVCATQIRDWLKAGQTGDALL
VSEKTSRPVRASDISVLVRSRQEAAQIRDALTLLAIPSVYLSNRDSVFETLEAQEMLWIL
QAVMTPERENTLRSAMAASMMGLTAQDIETLNNDENAWDTVVEEFDGYRQIWHKRGVMPM
LRALMSARNIAENLLATAGGERRLTDILHISELLQEAGSQLESEHALVRWLSQHILEPDS
NAASQQLRLESDKHLVQIVTIHKSKGLEYPLVWLPFITHFRVQDQAFYHDRNSFDAVLDL
SHAEESVELAEAERLAEDLRLLYVALTRSVWHCSLGVAPLVRRRGDKKGDTDVHQSALGR
LLQKGEPKDAAGLRACIDALCGEDIACRTPDEPDSERWQVTEASRAALSARELRRMPADN
WRVTSYSGLQQQGHSVAQDLIPRLDVDAAGVGDVVEEPELTPHQFPRGASPGTFLHSLFE
DLDFTQPVDPAWVREKLELGGYDAHWEPVLTQWLDAVLQAPLTERGVSLRHLSAREKQVE
MAFYLPIAQPLIASQLDALIRRFDPLSAGCPPLDFMQVRGMLKGFIDLVFRHEGRYYLLD
YKSNWLGEDSTAYTQEAMASAMQAHRYDLQYQLYTLALHRYLRHRIADYDYERHFGGVIY
LFLRGVDREYPRQGIFSTRPDGELIALMDEMFAGVVAEEAQ
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatgccgctgagtcccttgatcctttacgcttgccccttacgggcgagcgtctg
attgaagcctctgcgggcactggcaaaacgtttactatcgccgcgttgtatctgcgcctg
ctgctcggattgggcggctctgccgcctttccccgaccgctgaccgtggaagaactgttg
gtcgtgacgtttaccgaggcggccaccgaagagttacgcggccgcatccgcagcaacatc
catgaactgcgcatcgcctgtctgcgtgaaactaccgataacccgttatatgctcgcctg
ctggaagagatcgaggataaaaagcaggcggcgcagtggttactgttggcggaaagacag
atggatgaggcggcagtattcaccatccacggtttttgccagcgcatgctcagcctgaat
gcgtttgagtccggcatgctgttcgagcagcaattaatcgaagatgaatcccttctgcgc
tatcaggcctgcgccgacttctggcggcgtcactgttatccgctgccacgcgaaattgcc
caggttgtctttgaagcgtggaaaggcccccgggcgctactgaaagatatcgatcgttat
ttgcagggcgaagcgccggtcatcaaagcaccgccgccgtcagacgagacgctggcgtct
cgccacgaacacattttgtcgcgtattaacgccctgaagcagcaatggtgcgcgtccgtt
gatgaactggatggggtgatagagtcgtcgggaatcgatcgcagaaaattcaatcgcggc
aaccagacgaaatggatcgagaagatcacggcgtgggcgcaggcggaaacgcaaacctat
caattacccgacgcgctggagaaattctcccggcgattcctggaagagagaaccaaagcg
ggcggcataaccccgcagcatccgctgtttgtcgccattgaggaactgctggctgaaccg
ttgacgataaaagatctgctgattacccgtgcgctggcagaaatccgcgagacggttgcg
caggaaaaacaacgccggggtgaattaggtttcgacgacatgctgagtcgtctggatgtt
gcgctgcgtagtaatagcggcgatgcgctggcaagcgcaattcgtggccgtttcccggtg
gcgatgattgatgaatttcaggataccgacccgcagcagtaccgcattttccgccgcatc
tggcggcatcagccggacaccgcgctgttgctgattggcgatccgaaacaggcgatttat
gcgtttcgcggcgcggatatcttcacctacatgaaagcccgcagcgaggtcagcgcccat
tatacgctggataccaactggcgttccgcaccgggcatggtcaacagcgtgaatacgttg
ttcagtcagatgaacgacgcctttatgttccgcgaaattccatttgcgccggttaaatcg
gcccagaagaaccagtcgctgcgctttgtgctgaacggcgagacgcagcccgccatgaac
atgtggttgatggaaggggaaagctgcggcattggcgactatcagagttacatggcgcag
gtgtgcgcgacgcaaattcgtgactggctgaaagccgggcaaactggcgatgcgctgctt
gttagcgagaaaacctcacgcccggttcgagcctcggatatcagcgtgctggtgcgaagc
cgccaggaagcggcacaaattcgtgatgcgctgacgctgctggcgattccgtccgtttat
ctctccaaccgcgacagcgtatttgagacgctggaagcgcaggagatgctgtggatctta
caggccgtcatgacgcctgagcgtgaaaatacgctgcgtagcgcgatggcggcctcaatg
atggggttgaccgcgcaggacatcgaaacgctgaataacgacgaaaatgcctgggatacg
gtggtcgaagagttcgacggctatcgtcaaatctggcataagcgcggcgtcatgcccatg
ctgcgcgcgctgatgtcagcgcggaatattgccgaaaacctgctggcgacggcgggaggc
gagcgccgcctgaccgatattctgcacatcagcgaattgttgcaggaagccggttcgcag
ctggaaagtgagcatgcgctggtgcgctggctgtcgcagcatattcttgagccggacagc
aatgccgccagccagcaactgcggctggaaagcgataaacatctggtgcaaatcgtcacc
atccataaatcaaaagggctggaatacccgctcgtctggctgccttttattacccatttc
cgcgtgcaggatcaggcgttttatcacgatcgcaattcgtttgacgcggtgctggatctc
agccacgccgaggagagcgttgaactggcggaagcagagcgtctggcggaagacctgcgt
ttgctttatgtggcgctgacccgttcggtgtggcattgcagcctcggcgttgcgccgttg
gtgcgtcgtcgcggagataagaaaggcgataccgatgtacaccagagcgcgctcgggcgc
ctgctgcaaaaaggtgagccgaaagatgccgctgggcttcgcgcctgcattgacgcgctt
tgcggggaggatatcgcctgtcggacgccagacgaaccggacagcgaacgctggcaggta
acggaagcgtcgcgtgcggcgctaagcgccagagaattacgccgaatgcctgccgacaac
tggcgagtaaccagttattccggcttacagcagcaaggccatagcgtcgcccaggattta
attccgcgtctggatgtggatgccgccggggtaggggacgtggtggaagagccggagctg
acgccgcaccagttcccgcgaggggcatcgccgggtacattcctgcatagcctgtttgaa
gacctcgactttacgcagcccgttgacccggcctgggtacgggaaaaactggagcttggc
ggttatgacgcgcactgggagccggttttaacgcagtggctggacgctgttttgcaggct
cccctgaccgaacgcggcgtgagtctgcgtcatctttccgcccgtgaaaaacaggtggag
atggcgttttatctgccgatcgcacagccgcttatcgccagtcaactggatgcgctgatt
cgccggtttgatccgctctcggcgggctgcccgccgctcgacttcatgcaggttcgcggc
atgctgaaagggtttatcgacctggtgtttcgccatgaagggcggtattacctgctcgat
tacaaatcaaactggctgggcgaagacagcacggcctacactcaggaggcgatggcctca
gcgatgcaggcgcatcgctatgacctgcaatatcagttgtatacgctggcgttgcaccgc
tatctgcgccatcgcatcgccgattatgactatgaacgtcatttcggcggcgtgatctac
cttttcctgcgcggcgttgaccgtgaatatccacggcagggcattttctcgacccggccg
gacggcgaactgattgcgttaatggatgagatgtttgcaggcgttgtagcggaggaggcg
caatga
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