Citrobacter sp. TBCP-5362: FD428_10115
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Entry
FD428_10115 CDS
T10692
Symbol
nirD
Name
(GenBank) nitrite reductase small subunit NirD
KO
K00361
nitrite reductase [NAD(P)H] [EC:
1.7.1.4
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq00910
Nitrogen metabolism
ciq01100
Metabolic pathways
ciq01120
Microbial metabolism in diverse environments
ciq01310
Nitrogen cycle
Module
ciq_M00531
Assimilatory nitrate reduction, nitrate => ammonia
ciq_M00615
Nitrate assimilation
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09100 Metabolism
09102 Energy metabolism
00910 Nitrogen metabolism
FD428_10115 (nirD)
Enzymes [BR:
ciq01000
]
1. Oxidoreductases
1.7 Acting on other nitrogenous compounds as donors
1.7.1 With NAD+ or NADP+ as acceptor
1.7.1.4 nitrite reductase [NAD(P)H]
FD428_10115 (nirD)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pyr_redox_2
Pyr_redox
Rieske_2
Rubredoxin_C
NIR_SIR
Fer2_BFD
Pyr_redox_3
NIR_SIR_ferr
AlaDh_PNT_C
GIDA
NAD_binding_9
NAD_binding_8
Rieske_4
FAD_binding_3
Motif
Other DBs
NCBI-ProteinID:
QCQ71333
LinkDB
All DBs
Position
2110554..2114621
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AA seq
1355 aa
AA seq
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MTQRLVIIGNGMAATRLVEALLAQAPQAFTITVVGEEPQHAYNRIQLSPVLGGEKRFAQT
LLHPPEWYQRHGVTVLTGETVIAVDAIARTATTTGRTLAWDALVFATGSVPFIPPIPGAD
LPHVHAFRTINDVDSILHGCGPVAVLGGGVLGVEAAAALRLKCDNVTLIHRGNRFMEQQL
DEQAGELLAEHLAARGIDCVLSSGIDRITPDDVTLANGCVLSATRVVIATGVKPNTALAQ
ASGVPCQRGIVVDGQLRTAVAGISAIGECCEIDGQTWGLVAPCLAHAEVLAARLAGIPCA
DFHWQDSGTRLKVTGIDLFSAGEVNATAGDDLMRTFDPLSGHYRRLLIRNGRLQGVLLMG
DCRSAAPLTDLLAQAASANPDWLFDRFDTQPAAAGQVTMTKPTLAVVGHGMVGHHFLEQC
VSRNLHLDYQIVVFGEERYAAYDRVHLSEYFAGRSAESLSLVEGDFFARHGIELRLSQCV
TTIDRDARVIRTAGGHETHWDKLVLATGSYPFVPPVKGGDSAACFVYRTLDDLDAIAAKA
KHSRRGVVIGGGLLGLEAANALRQLGLETHVVEFAPSLMAVQLDNAGAAMLREKIEALGV
SVHTSKSTAEIVSTPQGLQLVFTDSERLETDMVVFSAGIRPQDALARGAGLRIGERGGVC
IDNHCLTSDADVFAIGECALWDGRVFGLVAPGYQMARVAAAQLAGEDAAFSGADMSTKLK
LLGVDVASFGDAQGRTPGAQSYQWTHGPEQIYKKIVVSADGKTLLGGVLVGDAADYATLL
QMMLNGMALPGQPESLILPALAGSAPKALGVAALPDSAQICSCHNVSKADICQAVSAGAT
EMGAIKQCTKAATGCGGCSALVKQVMEFQLAAQGVEVKKDICEHFAYSRQEIYHLVRVNR
IHTFEQLISRYGRGHGCEICKPLVGSVLASCWNEYLLKPAHLPLQDTNDRYFANIQKDGS
YSVVPRMAAGEVTPDGLIAIGEIAKRYQLYSKITGGQRIDLFGARLEQLPDIWRDLVAAG
FETGHAYGKSLRTVKSCVGSTWCRYGVQDSTGLAVTLENRYKGLRAPHKIKMAVSGCTRE
CAEAQGKDVGVIATDKGWNLYVCGNGGMKPRHADLFASDLDDATLIKFVDRFLMFYIRTA
DRLQRTSTWMDNLEGGIDYLREVVIHDSLGIGEELEQEMARIVETYQCEWQTTLNDPQRL
ALFRTSVNGDEPDEAVARQMLRGQPQLAKPAAPARAILPTKPWQEVCQLEEIPEQAGIGA
RLGNLQIALFRFGQTIYALDNHEPGSDANVLSRGILGDAGGEPVVISPLYKQRIRLRDGR
QYDSGEPVVRAWPVKVEAGKVWVGNQALLLRAEAS
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgacgcagcgactggtcattatcggcaacgggatggctgccacccgtctggtggaggcg
ctgttggcgcaggcgccgcaggccttcacgataaccgtggtgggggaagaaccgcagcat
gcgtataaccgcattcagctttcgcccgtactgggcggcgaaaagcgctttgcgcagacg
ctgctgcatccgcctgagtggtatcagcgccacggcgtcacggtgctgacgggggaaacc
gtcatcgccgttgacgcgatagcgcgtaccgccaccaccaccggtcgaacgctggcgtgg
gatgcgctggtgtttgccaccggctcggttccgtttattccgccgatccccggcgctgat
ttaccccatgtgcatgcttttcgcacgattaacgatgtggacagcatcctgcatggctgc
gggccggttgccgtgctgggcggcggtgtgcttggggtcgaggcagcggccgcgctgcga
ctaaaatgtgacaatgtcacgttgattcatcgtggcaatcggttcatggagcaacagttg
gatgagcaggccggggaactgctggcggaacaccttgccgcacgcgggattgactgcgtg
ctgtcgtccggtatcgacaggattacgcctgatgacgtcacgttggcgaacggttgcgtg
ctgtctgcaacgcgcgtggtgattgccactggcgtaaaacccaatacggcgctggcgcag
gcaagcggggtgccctgtcagcgtggaattgtggtggacgggcaactgcgcacggcggtg
gcggggatcagcgcgataggcgagtgctgtgaaatcgacggccagacctgggggctggtc
gcgccctgtctggcgcacgcggaggtgctggcggcccgcctggcgggaatcccctgcgct
gattttcactggcaggacagcggtacgcgtctgaaggtgacgggcatcgatctgttcagc
gccggggaggtaaacgccacggcaggtgatgatctgatgcgcacatttgacccgctgagc
ggccattaccgtcgtctgctgatccgcaatggacggttacagggggtgctgctgatgggc
gattgccgtagcgccgcgccgttgactgatttgctggcgcaggctgcgtcggcgaatcct
gactggttattcgacagatttgatacgcagcctgcggctgcaggacaggtgactatgaca
aaacccacgttggctgttgttggacacggtatggttggccaccattttcttgagcaatgc
gttagccgcaatctgcatcttgactatcagattgtggtctttggcgaagagcgttatgcc
gcctatgaccgcgttcatctgtcggagtatttcgccgggcgcagcgcagaatcgctctcg
ctggtggaaggcgatttttttgcccgccacggtattgaactgcggttgtcgcaatgcgtt
acgacgatcgatcgggatgcccgcgttattcgcaccgccggcggacatgaaacgcactgg
gataaactggtgctggcaaccggatcatatccctttgttccgccggtgaaaggcggtgat
tcagcggcgtgtttcgtctatcgcacgctggacgatctggatgcgattgccgcgaaggca
aaacactctcgccgtggggtggtgattggcggcgggctgttggggctggaggcggcgaac
gccttgcggcaattagggctggagacgcatgttgtcgagttcgcgccatcgttaatggcg
gttcagcttgataacgctggcgcggcgatgctgcgcgaaaaaatcgaggcgctgggcgtg
agcgtgcatacctcgaaatccactgcggaaattgtctccaccccgcaagggttacagttg
gtgtttacggatagtgagcgtctggagacggatatggtggtgttttctgccggtattcgc
ccgcaggatgcgctggcgcgcggcgccggacttcgtatcggagaacgcggcggggtgtgt
attgataaccactgtctgacctctgacgcggatgtttttgccatcggtgaatgtgcgctc
tgggacggcagggtgtttgggctggttgcgccgggataccagatggcgcgcgtggcggca
gcgcagctggccggtgaagatgcggcgttcagcggggcggatatgagcaccaaactcaaa
ttactgggggtggatgtggcctcgttcggcgatgcgcaggggcgcacgccaggcgcgcaa
agctatcagtggacgcatggcccggagcaaatctacaaaaaaattgtggtcagcgcggac
ggcaagacgctgctgggcggcgtgctggtgggggatgcggcggattacgccacgttattg
caaatgatgcttaacggtatggcgctgcctgggcagccggaatcgctgattttacctgca
ctggcgggcagcgcgccgaaagcgttgggcgttgcggcattaccggacagcgcgcaaata
tgctcttgtcataacgtcagcaaggcagatatttgccaggcggtcagcgcgggcgcaacg
gagatgggcgcaatcaagcagtgcaccaaagcggcaaccggctgcggtgggtgcagcgcg
ctggtgaaacaggtgatggagttccaactggcggcacagggcgtggaggttaaaaaggat
atctgcgaacactttgcgtactcgcgacaggagatttaccacctggtgcgggtgaaccgc
atccacacctttgagcagctgattagccgctatggtcgcgggcatggttgtgagatttgc
aaaccgctggtgggctcggtgctggcctcctgctggaatgagtatctgctaaaacctgcg
catctgccgttgcaggacaccaacgatcgttattttgccaatatccagaaagacggttcg
tattccgttgtaccgcgcatggcggcaggcgaggtgacgccggatgggctgatcgccatt
ggcgaaatcgccaaacgttatcagctctacagcaaaattaccggcgggcagcgtatcgac
ttgtttggcgcgcgcctcgaacaactgccggatatctggcgcgatctggttgccgccggt
tttgaaaccgggcacgcctacgggaagtcgttgcgcacggtgaaatcctgcgtcgggtca
acctggtgtcgctatggcgttcaggattcaaccggtctggccgtcacgctggagaaccgc
tacaagggactgcgcgccccgcacaaaatcaaaatggcggtctccggctgtacccgcgag
tgtgccgaagcgcaggggaaagacgttggcgtgatcgccaccgataagggctggaacctg
tatgtctgcggaaacggcggtatgaagccgcgtcatgcggatctgttcgccagcgatctg
gatgatgccacgctgattaaattcgtggatcgcttcctgatgttctatatccgtaccgcc
gatcgcctgcaacgcaccagcacctggatggataatcttgaagggggcatcgactatctg
cgcgaggtggttatacacgacagcctgggtatcggcgaggagcttgaacaggagatggcg
cggattgtggaaacataccagtgtgaatggcaaaccacgctgaacgatccgcagcgtctg
gcgctgttccgcaccagcgtgaacggtgacgaaccggatgaagccgtagcgcgccagatg
ctacgtggacagccgcagctggcgaaaccggcggcgccagcgagagccatcctgccgaca
aaaccctggcaggaggtttgtcaactggaggagatccccgagcaggcgggcattggcgcc
cgtctaggcaacctgcaaattgcgctgtttcgctttggtcagacgatttacgcccttgat
aaccatgaacccggcagcgacgcaaacgtgctttcccggggaattctgggggatgccggc
ggtgagcccgttgtcatttcaccgctctacaaacagcgtattcgcctgcgcgatggtcgg
cagtatgacagcggtgagcccgttgtgcgcgcctggccagtgaaagtcgaagcgggcaag
gtatgggtcgggaatcaggcactactgctgcgcgcggaggcgtcatga
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