Citrobacter sp. TBCP-5362: FD428_10370
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Entry
FD428_10370 CDS
T10692
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ciq Citrobacter sp. TBCP-5362
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciq03032
]
FD428_10370 (topA)
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_10370 (topA)
Enzymes [BR:
ciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
FD428_10370 (topA)
DNA replication proteins [BR:
ciq03032
]
Prokaryotic type
DNA Topoisomerases
FD428_10370 (topA)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
FD428_10370 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
DUF4795
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
QCQ71376
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Position
2168794..2171391
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AA seq
865 aa
AA seq
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MGKALVIVESPAKAKTINKYLGNDYVVKSSVGHIRDLPTSGSAAKKSADSTSTKTAKKPK
KDERGALVNRMGVDPWHNWDAHYEVLPGKEKVVSELKQLAEKADHIYLATDLDREGEAIA
WHLREVIGGDDTRYSRVVFNEITKNAIRQAFDKPGELNIDRVNAQQARRFMDRVVGYMVS
PLLWKKIARGLSAGRVQSVAVRLVVERERDIKAFVPEEFWEVNASTTTPSGDALPLDVTH
QNDKPFRPVNREQTLAAVSLLEKARYSVLEREDKPTSSKPGAPFITSTLQQAASTRLGFG
VKKTMMMAQRLYEAGYITYMRTDSTNLSQDAVNMVRGYISDSFGKKYLPENPNQYASKEN
SQEAHEAIRPSDVAVMAEALKDMEADAQKLYQLIWRQFVACQMTPAQYDSTTLTVGAGDF
RLKARGRILRFDGWTKVMPALRKGDEDRTLPAVNKGDVLTLVELTPAQHFTKPPARFSEA
SLVKELEKRGIGRPSTYASIISTIQDRGYVRVENRRFYAEKMGEIVTDRLEENFRELMNY
DFTAQMEDSLDKVASHEAEWKNVLDNFFSDFTQQLDKAEKDPEEGGMRPNQMVLTSIDCP
TCGRKMGIRTASTGVFLGCSGYALPPKERCKTTINLVPENEVLNVLEGDDAETNALRAKR
RCQKCGTAMDSYLIDPKRKLHVCGNNPTCDGYEIEEGEFRIKGYDGPIVECEKCGSEMHL
KMGRFGKYMACTNDECKNTRKILRNGEVAPPKEDPVPLPELPCEKSDAYFVLRDGAAGIF
LAANTFPKSRETRAPLVEELYRFRDRLPEKLRYLADAPQQDPEGNKTLVRFSRKTKQQYV
AAEKDGKATGWSAFFVDGKWVEGKK
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaagctcttgtcatcgttgagtccccggcaaaagccaaaacgatcaacaagtat
ctgggtaatgattacgtggttaagtccagcgtcggtcatatccgtgatttgccgaccagt
ggctcagcagctaaaaagagcgccgactctacctccaccaaaacggctaaaaagcccaaa
aaggatgaacgtggcgctctcgtcaaccgaatgggggttgacccttggcataactgggat
gcgcattatgaagtgctgcccggtaaagagaaggtcgtctctgaactgaaacaattggct
gaaaaagccgaccacatctatctcgcaaccgaccttgaccgcgaaggggaagccattgcc
tggcacctgcgggaagtaatcgggggtgatgacacgcgctatagccgcgtggtgtttaac
gaaataaccaaaaacgcgattcgccaggcgtttgataagccaggcgaactgaatatcgac
cgtgttaacgcgcagcaggcgcgccgctttatggaccgcgttgtgggctatatggtgtcg
ccattgctgtggaaaaaaattgcgcgaggcctgtcggcaggccgcgtacagtccgttgcc
gtgcgtctggttgttgagcgcgaacgtgacatcaaagcgttcgtaccggaagagttctgg
gaagtgaacgccagcacaacaacgccttctggcgatgccttgccgcttgacgttacgcac
cagaatgataaaccgttccgtccggttaaccgcgagcaaacgctggcggcggtcagccta
ctggaaaaagcgcgttacagcgtactggagcgtgaagataaaccgaccagcagcaagcct
ggcgcgccgtttatcacgtcgacgctgcaacaggcggcgagcacgcgtctgggctttggc
gtgaaaaaaaccatgatgatggcgcagcgcttgtacgaagcgggctacatcacctacatg
cgtactgactccaccaacctgagccaggatgcggtaaacatggttcgcggttatatcagc
gatagcttcggcaagaaatacctgccggagaacccgaaccagtacgccagcaaagaaaat
tcacaggaagcgcacgaagcgatccgtccttctgatgtcgcggtgatggccgaagcgctg
aaggatatggaagcggacgcgcagaaactgtatcagctgatctggcgtcagtttgtcgcc
tgtcagatgacgccagcccagtacgattccaccacgctgacggtcggtgcgggtgatttc
cgcctgaaagcgcgtggccgcattctgcgtttcgacggctggacgaaagtcatgcctgcg
ctgcgtaaaggcgatgaagaccggacgttgcctgcggtgaataaaggcgatgtgttgacg
ctggttgaactgaccccggcgcagcacttcaccaaaccaccggcgcgcttcagtgaagca
tcgctggttaaagagctggaaaaacgcggtattggtcgtccatccacctatgcgtcgatc
atctcgaccattcaggatcgcggttatgtccgcgtggaaaaccgtcgcttctatgctgaa
aaaatgggtgagattgtcaccgatagactggaagaaaacttccgcgagctgatgaactac
gatttcaccgcccagatggaagacagcctcgacaaggtggccagccacgaagccgagtgg
aaaaacgtgcttgataacttcttcagcgattttactcagcagcttgataaagcggagaaa
gatcctgaagagggcggcatgcgtcctaaccagatggtgctgaccagcattgactgcccg
acatgcgggcgcaaaatggggattcgcaccgccagcaccggcgtgttcctgggatgttcc
ggctatgcgctaccgccgaaagagcgctgcaaaaccaccatcaacctggtgccggaaaat
gaagtgctgaacgtactggaaggcgatgatgcggaaaccaacgctttgcgtgcaaaacgt
cgttgccagaagtgcggcaccgcaatggacagctacctgatcgatccgaaacgcaagctg
catgtctgcggtaataacccgacctgcgacggttacgaaatcgaagagggcgagttccgt
attaaaggttatgacggcccgatcgttgagtgcgaaaaatgtggctctgaaatgcacctg
aaaatggggcgttttggtaagtacatggcctgtaccaacgacgaatgtaaaaatacccgt
aagattctgcgtaacggtgaagtcgcgccgccgaaagaagatccggtaccgttgccggaa
ctgccgtgcgagaaatcggacgcgtatttcgtgctgcgtgacggcgccgcagggatcttc
ctcgcggcgaataccttcccgaaatcgcgtgaaacgcgtgcgccgttagtggaagagttg
taccgcttccgcgaccgtctgccggaaaaactgcgttatctggccgatgcgccgcagcag
gacccggaaggcaataagacgctggtgcgttttagccgtaagacgaaacagcagtatgtt
gccgctgaaaaagacgggaaagcgacgggatggtccgcattcttcgttgatggcaagtgg
gtagaaggtaagaaataa
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