Citrobacter sp. TBCP-5362: FD428_12715
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Entry
FD428_12715 CDS
T10692
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD428_12715
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciq03019
]
FD428_12715
03009 Ribosome biogenesis [BR:
ciq03009
]
FD428_12715
Enzymes [BR:
ciq01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
FD428_12715
Messenger RNA biogenesis [BR:
ciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
FD428_12715
Ribosome biogenesis [BR:
ciq03009
]
Prokaryotic type
rRNA processing factors
FD428_12715
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
Motif
Other DBs
NCBI-ProteinID:
QCQ71812
LinkDB
All DBs
Position
2652699..2655896
Genome browser
AA seq
1065 aa
AA seq
DB search
MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY
GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI
SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL
QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA
RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT
AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE
NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS
LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRTAVNAIETRQDGVRCVIVPNDQME
TPHYSVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEYAERKRPEQPALATFAMPEVPPA
PTPAEPAVKAATAAPKAVATAPAQPGLLTRFFGALKNMFSGSEVAKPVEQPAPKAEEKPE
RQQDRRKSRQNNRRDRNDRRDNRDNRDNRAEGGENRDDNRRNRRQAQQQNAEARDNRQQS
NDVADKAKSGDEQQTPRRERNRRRNDEKRQAQQEVKALNLDEQPAQETEQEERVRQAQPR
RKQRQLSQKVRYTDSATSEAEAVATPVVEDAVATQPATQSAPAQRTELAKVDLPAIADVA
PAEQEENGEARDNAGMPRRSRRSPRHLRVSGQRRRRYRDERYPLQSPMPLTVACASPEMA
SGKVWIRYPVARPQDTQVEAQREEETVQAQPVAVEPQVVAAAAEQVVDAPAQTETVVAEP
QPATVETTHPEVIATPVEEQPQVIAEADVPVAQEVAAQAEPVADVQETTTAEESADVVIA
EPEEIVTETVEPVDVAAEPEEIVAAPVAVAVAETVSESAVTTGEKSVSHASAPMTRAPAP
EYVPEAPHQSDWQRPAFIFEGKGAAGGHSATHQAAAPATRPQPVE
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttaatcaacgcaactcagcaggaagagttgcgtgttgcccttgtagat
gggcagcgcctgtacgacctggacattgagagtccaggacacgagcagaaaaaagcgaac
atctataaaggcaaaattacccgtatcgaaccgagtctggaagcggcttttgttgattac
ggcgctgaacgtcacggtttcctcccgttaaaagaaattgcccgcgaatatttccccgcc
aactacaacgcccacggccgtccaaacattaaagatgtgttgcgcgaaggtcaggaagtg
attgttcagattgataaagaagaacgcggcaacaaaggcgctgcgctgacgacgtttatc
agtctggcagggagctatctggttttaatgccgaacaacccgcgcgcgggcggcatctcc
cgtcgcattgaaggcgacgatcgcaccgaattaaaagaagcgctggcaagcctcgaactg
cctgacggcatggggcttatcgtgcgtaccgcaggcgtcggcaaatccgccgaagcgttg
cagtgggacctgagcttccgcctgaaacactgggaagcgattcagaaagccgctgaaagc
cgccctgctccattcctgatccatcaggaaagcaacgttatcgtccgcgcattccgtgac
tacttacgtcaggatatcggcgaaattcttatcgataatccgaaagtgcttgagctggcg
cgccagcacatcgcggcgttgggtcgcccggatttcagcagcaagattaagctttatacc
ggcgagattccgctgttcagccactaccagatcgagtcgcaaattgaatccgccttccag
cgtgaagtgcgtctgccttccggcggctctatcgttattgacacaaccgaagcgttaacc
gcgattgatattaactccgcgcgtgccacacgcggcggcgatatcgaagaaaccgcgttt
aacacaaacctggaagcagccgatgaaattgctcgccagttgcgcttgcgcgacctcggt
ggcctgatcgttatcgacttcatcgacatgacgccagtacgccaccagcgcgctgtggaa
aaccgtctgcgcgaagcggtacgtcaggatcgtgcgcgtatccagattagccatatttct
cgttttggcctgctggagatgtcccgccagcgtctcagcccgtctctgggcgagtccagc
catcacgtctgcccacgctgtagcggcaccggcaccgtacgcgacaacgaatcgctctcc
ctgtctattctgcgtctgattgaagaagaagcgctgaaagagaatacccaggaagttcac
gccattgttccggtcccgatcgcctcttacctgcttaacgaaaagcgcaccgcggttaat
gctattgagactcgccaggatggcgtgcgctgcgtgatcgtaccaaacgatcagatggaa
acgccgcactactccgttttgcgcgtacgtaaaggggaagaaacgccaaccctgagctac
atgctgccgaaactgcatgaagaagcgatggcgttaccttctgaagaagagtacgccgag
cgtaaacgccctgaacaaccagcactggcgaccttcgcgatgccggaagtgccgcctgcg
ccgacgccagcagaacctgcggtgaaagcagcgacggcagcaccgaaagccgttgccact
gcgcctgcacaaccaggtctgcttacccgcttcttcggcgcgctgaaaaacatgttcagc
ggcagcgaagtcgctaagccggttgaacaacctgcaccgaaagcagaggaaaaaccggag
cgtcagcaggatcgtcgtaagtctcgccagaataatcgccgcgaccgtaacgatcgccgt
gacaaccgtgataatcgcgacaaccgcgctgaaggcggtgaaaaccgtgatgacaaccgt
cgtaaccgtcgtcaggcgcagcagcagaacgcagaagcgcgtgacaaccgccagcagtct
aacgacgttgccgataaggcgaagtccggtgacgagcagcagacgccgcgtcgtgaacgc
aaccgtcgtcgcaacgatgaaaaacgtcaggcacagcaagaagtcaaggcgctgaatctg
gatgagcaaccggctcaggagacggaacaggaagaacgcgttcgtcaggcgcagcctcgc
cgtaaacagcgtcagctgagccagaaagttcgttacacagactccgcaacctctgaagca
gaagctgtcgcaacgccagtcgtcgaagacgctgtcgccacccagcctgctacgcaaagc
gcgcctgctcagcgtactgaactggcgaaagtcgacctgccagcgatcgcagacgttgcg
ccagcagagcaggaagaaaacggcgaagcgcgtgataacgcaggaatgccgcgtcgctcc
cgtcgttctcctcgccacctgcgcgtcagcggccagcgtcgtcgtcgctaccgcgatgag
cgttacccgcttcaatcgccaatgccgttaaccgtcgcttgcgcttcaccggaaatggcg
tctggcaaagtgtggattcgctaccctgtcgcccgtcctcaggatacgcaggttgaagca
cagcgcgaagaagagaccgtacaagctcagccggttgcagtagagccgcaggtcgtcgct
gccgcagccgaacaggttgtagacgcaccggctcaaactgaaaccgttgtcgctgaacct
cagcccgctactgtggaaacaacgcatcctgaagtgattgccaccccggttgaagaacaa
cctcaggtgattgcagaggctgacgtccctgttgcgcaggaagtcgctgcgcaagcggaa
cctgtcgctgacgttcaggaaaccacgacggctgaagaatccgctgacgttgtcatcgcc
gaaccggaagagatcgttacagaaacggttgaacctgtcgatgttgccgctgaaccggaa
gagattgtcgctgcgcctgtcgccgtcgccgttgctgaaaccgtgtcagaaagcgcggta
acaaccggggagaaatccgtcagccacgccagtgcgccgatgacccgcgcgcctgcgccg
gaatatgtcccggaagcgccacatcaaagcgactggcagcgccctgccttcatctttgaa
ggtaaaggtgcggcaggtggtcatagcgcaacgcatcaggccgccgcaccagccacgcgc
ccgcagcctgtagaataa
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