Citrobacter sp. TBCP-5362: FD428_14360
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Entry
FD428_14360 CDS
T10692
Symbol
rhlE
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD428_14360 (rhlE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciq03019
]
FD428_14360 (rhlE)
Enzymes [BR:
ciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FD428_14360 (rhlE)
Messenger RNA biogenesis [BR:
ciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FD428_14360 (rhlE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
QCQ72129
LinkDB
All DBs
Position
complement(3001967..3003325)
Genome browser
AA seq
452 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITQQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPPK
RQNLLFSATFSDDIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQQRGGGGRGRGQGQGQGGAGRAQQPRRN
DGGAPKAKPRSGEGKPGGDKPRPPRRPRRLAD
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattcccttgggttgaatcctgatattttgcgcgcgattgccgagcagggt
taccgtgaacctacccctattcagcagcaggcgatccctgcggtgctggaaggccgcgac
ctgatggccagcgcccagacggggacgggtaaaacagccggttttacgctgccgctgtta
caacatctgatcacgcagcagccgcacgcgaagggccgtcgcccggtacgcgcgttgatt
ctgacgccgacccgtgagctggcggcgcaaattggcgaaaacgtccgggattacagtaaa
tacctgaacattcgctctctggtcgtgtttggcggcgtcagcattaacccgcagatgatg
aaactgcgcggcggcgttgacgtgctggtggcaacgccggggcgtttgctcgacctggaa
catcaaaacgcggtgaagctggatcagattgagattctggtgctggatgaagctgaccgt
atgctcgacatgggctttatccacgatattcgccgcgtgctggcaaaactgccgccgaag
cgccagaacctgctgttctccgccacattctccgatgacattaaagcgcttgctgaaaag
ctgttgcataacccgctggaaattgaagtggcgcgccgtaataccgcttctgagcaggtg
acccagcacgttcatttcgtggataaaaaacgcaagcgcgaactgttgtcgcagatgatt
ggcaaaggcaactggcagcaggtgctggtctttacccgtaccaaacacggcgctaaccat
ctggcggaacagctgaataaagacggcattcgcagtgcggcgatccacggtaataaatct
cagggcgcgcgtacccgcgcactggctgatttcaaatccggcgatatccgtgtcctggtg
gcgaccgacatcgcggcgcgcgggctggatatcgaagagctgccgcatgtggtgaactat
gagctgccaaacgtcccggaagattacgttcaccgtatcggccgtaccggtcgtgccgcc
gcgaccggcgaagcgttatcgctggtctgcgttgatgaacacaaactgctgcgcgatatc
gagaagctgctgaaaaaagagatcccgcgcatcaccacgccgggttatgaaccagacccg
tcaattaaagcggagccgattcagaacggtcgccagcagcagcgtggcggcggtggtcgc
ggccgaggccagggtcagggacagggcggagcaggccgtgcccagcaaccgcgtcgcaat
gatggcggggcgccgaaagccaaaccgcgcagcggagaaggtaagccaggcggcgataaa
ccgcgtccgccgcgccgcccgcgcagactggcggattaa
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