Citrobacter sp. TBCP-5362: FD428_16335
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Entry
FD428_16335 CDS
T10692
Symbol
sbcC
Name
(GenBank) exonuclease subunit SbcC
KO
K03546
DNA repair protein SbcC/Rad50
Organism
ciq Citrobacter sp. TBCP-5362
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_16335 (sbcC)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
FD428_16335 (sbcC)
Archaeal homologous recombinant proteins
FD428_16335 (sbcC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
SMC_N
AAA_29
ABC_tran
AAA_15
cobW
nSTAND3
AAA_21
ABC_ATPase
TsaE
AAA_22
NTPase_1
MobB
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
QCQ72490
LinkDB
All DBs
Position
3416743..3419886
Genome browser
AA seq
1047 aa
AA seq
DB search
MKILSLRLKNLNSLKGEWKVDFTAEPFASNGLFAITGPTGAGKTTLLDAICLALYHETPR
LSTVSQSQNDLMTRDTAECLAEVEFEVKGESYRAFWSQNRARNQPDGNLQVPRVELARCT
DGKILADKVKDKLEMTASLTGLDYGRFTRSMLLSQGQFAAFLNAKPKERAELLEELTGTE
IYGQISALVFEKHKTARTDLEKLQAQASGVSLLAPEQQHSLNESLQALTDEEKQLLARQQ
LHQQHLHWLTRQNELQAEMNRRQQALRVAQEEQENAKPQLAALNLAHPARQLRPHWERIE
EQTAAAGRTRQQIQEVNTRLQSVLHLRSRIRHSAQQQSAELRATMQTLTGWLTEHERFRL
WSSELAGWRALFAQQSSDKAQLLKWQQQCASDIRKRDALPPNPLTLTPEEATAALAQHTQ
QQPLRQRLASLHGQIAPKQKRREQLQTAIQNSQQELARRSAALEDKRQKYKEKNQQFMDV
KTICEQEARIKDLESQRALLQSGQPCPLCGSTSHPAIASYQALEPGVNQARRDALEKEVK
TLAEEGAALRGQLETLTQQLHRDESEAQALVKEEQALTQEWQTLCDALKVTLQPQDDISP
WLTARQDYEQQLYQLSQRHMLQAQIAAHTGQVTQFQQQIDQRQTTLLSELRRYGLSLPAD
GEEASWLNARADDAQTWQQRQTELGELQMRIAQLVPLLETLPETDILPESDERVALDNWR
QVHDDCVSLQSQWQTLQQQEAQEMQRVAQAQAHFDAALKASVFDDRAAFLAALLDDETIA
RLEQHRQALENQLQQAQALAAQANQALAEHQQHPPEGLDLTLTPEHIQQAVAQLTGQLRD
NTTRQGEIRQQLKQDADNRQQQQSLMLAIENASQQVEDWGYLNALIGSKEGDKFRKFAQG
LTLDNLVWLANNQLTRLHGRYLLQRKASEALELEVVDTWQADAVRDTRTLSGGESFLVSL
ALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNATGKTIGVISHVEAMK
ERIPVQIKVKKINGLGYSKLDKMFAVE
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgaaaattctcagcctgcgcctgaaaaacctcaactccctgaagggagaatggaaagtc
gatttcacggcagaaccttttgccagcaacgggctgtttgccatcaccgggccgaccggc
gcggggaaaaccacgctgctcgacgccatctgtcttgcgctctatcacgagacgccgcgc
ctgagcaccgtttcgcaatcgcaaaacgatctgatgacccgcgatacggccgaatgcctc
gccgaagtggagttcgaggttaaaggcgagtcttaccgcgctttctggagccagaaccgc
gcccgcaatcagccggacggaaacctgcaagtgccgcgcgtggagctggcgcgctgcacc
gacggaaaaatcctcgccgataaggtcaaagataagctggagatgacggcatcgctcacc
gggctggattacggacgctttacccgctccatgctgctgtcacaggggcagttcgctgcg
tttctcaatgcgaagccaaaagaacgcgccgagcttctggaagagctgaccggaaccgaa
atctacgggcagatctctgcgctggtgtttgaaaagcacaagaccgcccgcaccgacctg
gaaaagcttcaggcgcaggccagcggcgtctcgctgttagcgccggagcagcagcattcc
ctcaatgaaagtttgcaggcgctcactgacgaagaaaaacagctgctcgcccgccagcag
cttcaccagcaacatctgcactggctgacccgtcagaatgagttgcaggctgaaatgaat
cgccgccagcaggcgctgcgggttgcccaggaagaacaggaaaacgcgaagccgcagctg
gccgcgctgaacctggcgcatcctgcccggcagttacgtccacactgggaacgcattgag
gaacaaaccgctgccgccgggcgcacacgccagcaaattcaggaagtaaatactcgctta
caaagcgtattacacctgcgcagccgcattcgacacagcgctcaacaacaatccgccgaa
ctgcgcgccaccatgcagacgctgaccgggtggctcaccgaacatgaacgcttccgcttg
tggagcagtgaactggcaggctggcgtgcgctgtttgctcaacagtccagcgataaagcg
cagctgcttaaatggcagcagcagtgtgcaagcgatatccgcaagcgtgacgcgcttcca
ccgaatcctctgacgcttacgccagaagaggccacggcagcgctggcgcagcatacgcaa
cagcagccgctgcgtcagcggctcgccagcctgcatgggcagatagcgcctaagcaaaaa
cgacgggaacaactgcaaaccgcgatccagaatagtcagcaggagttggcccgacgcagt
gcggcgctggaggataagcgacagaaatataaagaaaaaaatcagcagttcatggatgtg
aaaacgatttgcgagcaggaggcgcgcatcaaagatctggaaagccagcgagcgctgctg
caatccggccagccatgcccgctctgcggatcgacctcgcatccggcgattgcatcctat
caggcactcgaacccggcgtgaatcaggcgcggcgcgatgcactggaaaaagaggtcaag
acgctggcggaagaaggcgccgccttacgcgggcaactggaaacattaacgcagcagcta
caccgcgacgaaagcgaagcgcaggcactggtaaaagaggagcaagcgctcactcaagaa
tggcagacgctgtgtgacgcgctgaaagttacgctgcagcctcaggacgatatttcaccg
tggcttaccgcccggcaggactatgaacaacagctgtatcagctcagccagcgccatatg
ttgcaggcgcagatcgccgcccataccgggcaggttacgcaatttcagcagcaaatcgac
cagcgtcaaaccacgctgctgtctgaactgcgccgctacgggttatccctgcccgccgac
ggagaagaagcgtcgtggttaaacgcccgcgcggatgacgcgcaaacatggcaacagcgc
caaacggaactgggcgagctacaaatgcgcatcgcgcagttggttcccctgctggaaaca
ctaccggaaacagatattctcccggagagcgacgagcgcgtggcgctggataactggcgg
caggtacatgatgattgcgtttcgctacagagccagtggcagaccttgcaacagcaggag
gcgcaggaaatgcagcgggtagcacaggcgcaggcgcactttgacgccgcgctcaaggcc
agcgtatttgacgatcgcgccgccttccttgccgcgctgctggacgatgagaccatcgcc
cgcctcgaacaacatcgccaggcgctggaaaaccagttacagcaggcgcaggccttagcc
gctcaggcgaaccaggcgctggcagaacatcaacaacatccgcccgaggggctggatctc
acgctcacacctgaacacattcagcaggccgtggcgcaattaaccggacaactgcgggac
aatacgacgcgtcagggggagatccgccagcagctcaaacaggatgcggataaccgccaa
cagcagcagtctctgatgctggcgattgaaaacgcctcgcagcaggtggaggactggggt
tatctgaacgcgttaatcggctctaaagagggcgataaattccgcaaatttgctcaggga
ctgacgctggataacctggtctggctggcgaacaatcagctgactcgcctgcatggtcgt
tacctgctccagcgcaaggccagcgaagcgctggaactggaggtggtcgatacctggcaa
gcggatgccgttcgcgatacccgcacgctgtccggcggcgaaagtttcctggtcagtctg
gcgctggcgctggcgttgtccgatctggtcagccacaaaacgcgcatcgactccctgttc
cttgatgaagggttcggcacactggacagcgagacgctggataccgcgctggatgccctg
gacgcgctgaatgccaccggtaagacgattggcgtaataagccatgtggaagcgatgaaa
gaacgcattcctgtgcaaattaaggtgaagaaaatcaacgggctgggttacagcaaactg
gataagatgtttgctgtggaatga
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