Citrobacter sp. TBCP-5362: FD428_17340
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Entry
FD428_17340 CDS
T10692
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03030
DNA replication
ciq03430
Mismatch repair
ciq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FD428_17340 (dnaE)
03430 Mismatch repair
FD428_17340 (dnaE)
03440 Homologous recombination
FD428_17340 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ciq03032
]
FD428_17340 (dnaE)
03400 DNA repair and recombination proteins [BR:
ciq03400
]
FD428_17340 (dnaE)
Enzymes [BR:
ciq01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FD428_17340 (dnaE)
DNA replication proteins [BR:
ciq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FD428_17340 (dnaE)
DNA repair and recombination proteins [BR:
ciq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FD428_17340 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QCQ72678
LinkDB
All DBs
Position
complement(3623147..3626629)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGTGHGA
GIKPIVGADFHVRGTPLGDELCQLTVLAANNTGYQNLTLLISKAYQRGYGAEGPVIDREW
LTELKDGLILLSGGRMGDVGRSLLRGNSALVDECVAFYEEHFSDRYYLELIRTGRQDEET
YLHAAVELAETRGLPVVATNDVRFINSEDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEDEMCELFSDIPEALENSVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVKKSKEGL
EERLEFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEAGQHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSVFEEGARKNGIDGELAIKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNKDGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMMAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaaccacgtttcgtccacctgcgggtgcacagcgactactccatgatcgatggg
ctggcgaaaaccgggccgctggtaaaaaaggcggccgcgttaggcatgcctgcgctggcg
atcaccgattttaccaacctttgcggtctggtgaagttctacggaacgggccacggcgca
gggattaagcccattgtcggcgctgatttccatgttcgcggcaccccgctgggagatgaa
ctctgccagttgaccgtgctggcggcaaataatacgggctatcagaatcttactctgttg
atctcaaaagcctatcagcgtggctacggcgcagaagggccggtgatcgacagggaatgg
ctgactgaattaaaagacggtctgattttgctttccggtggccggatgggcgatgtgggc
cgcagtttgttgcgcggcaacagtgcgctggtggacgaatgcgtcgccttctatgaagaa
catttctccgaccgctactatctggagctgatccgcacgggtcggcaggatgaggaaacg
tatctgcatgcggcggttgagctggcggaaacgcgtggcttgccggttgtcgcaacgaat
gatgtccgctttattaacagcgaggactttgacgcgcacgaaatccgcgtggctattcac
gatggttttacgctcgacgatcctaaacgcccgcgtaactattcgccgcagcaatatatg
cgtagcgaagacgagatgtgcgaactgttctccgacatcccggaagcgctggaaaacagc
gttgagattgccaaacgctgtaacgtgaccgtccgtctgggcgaatacttcctgccgcag
tttccaacgggggacatgaccaccgaagacttcctggtcaagaaatcgaaagagggtctg
gaagaacgtctcgaattcctgttccctgacgaagcggtgcgtaaagagaagcgtcccccc
tatgacgaacgtctggacattgaacttcaggttattaaccagatggggttcccaggctac
ttcctcatcgtgatggagtttatccagtggtcgaaagataacggcgtaccggtagggccg
gggcgcggttccggtgcggggtcgctggtggcctatgcgctgaaaattaccgaccttgat
ccgctggaattcgacctgctgttcgaacgtttccttaacccggaacgtgtctccatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggttatcgaacacgtagcggat
atgtacggccgcgatgcggtatctcagattattaccttcggtacgatggcggcgaaagcg
gttatccgcgatgtggggcgcgtgctggggcacccatatggtttcgtggatcgtatctcg
aagctggtgccgcctgacccaggcatgacgctggcgaaagcgtttgaggcggaaccgcaa
ctgccggaaatttacgaggcggatgaggaagttaaagcgttgatcgatatggcgcgcaag
ctggaaggcgtcacgcgtaacgccggtaagcacgccggtggcgtggttatcgcgccgacc
aaaatcaccgattttgcgccgctgtactgtgatgaggccggccagcacccggtaacgcag
tttgataaaaatgacgtggaatacgcagggctggtcaaattcgacttcctggggctgcgc
acgctcaccatcattaactgggcgctggagatgatcaacgcccgccgcgagaagaatggc
gaaccgccgttggatatcgcggcgatcccgctggatgacaagaaaagcttcgacatgctg
caacgctcggaaaccacggcggtcttccagcttgaatcccgcggcatgaaagatctgatt
aagcgtctgcaacctgactgcttcgaagatatgatcgcgctggtggcgttgttccgcccc
ggcccgttgcagtcgggtatggtggataacttcatcgaccgtaagcatggccgtgaagag
atttcctatccagacgtgcaatggcagcatgaaagcctgaaacccgtactggagccgacc
tacggcatcatcctgtaccaggaacaggttatgcagattgcccaggtgctttccggttac
acccttggcggcgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gcgaaacagcgttccgtctttgaagagggcgccagaaagaacggcatcgacggcgagctg
gcgataaaaatcttcgacctggtggaaaagttcgccgggtacgggtttaacaaatcgcac
tctgccgcctatgcgctggtgtcttaccagacgctgtggctgaaagcgcactacccggca
gagtttatggcggcggtaatgaccgccgatatggacaacaccgaaaaagtggtcggtctg
gtggatgaatgctggcgcatggggcttaaaatcctgccgccggatatcaactcaggactg
tatcacttccacgttaacgacgacggcgaaattgtttacggcatcggcgcgatcaaaggc
gtgggtgaaggcccgattgaagctatcatcgaggcgcgcaataaagacggttacttccgc
gagctgtttgatttatgcgcccgcacggacacgaaaaagctcaaccgccgggtactggaa
aaactgattatgtccggggcgtttgaccgccttgggccgcaccgtgccgcgctgatgaac
tcgctgggcgacgcgctgaaagccgccgatcagcatgccaaagcggaagcgatcgggcag
gcggatatgtttggcgtactggcggaagagccggaacaaattgaacaatcctatgccagc
tgccagccgtggccggaacaggtggtgctggacggggaacgtgaaacgttggggctttac
ctgacgggacaccctatcaatcagtatttaaaagaaattgagcgctatgtcggaggctac
cggctgaaagacatgcatccgacagaacgtggtaaagtcaccacggctgcggggctcgtg
attgctgcaagggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgctggat
gaccgctctggacgtctggaagttatgctgtttaccgacgctctggataaatatcagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggcgggcttaaaatgatggcccgtgaagtcatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctcggggacaattccagtacatctctactatcag
agggcggatgcacgcgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttgctaaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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