Citrobacter sp. TBCP-5362: FD428_17510
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Entry
FD428_17510 CDS
T10692
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ciq Citrobacter sp. TBCP-5362
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ciq03019
]
FD428_17510 (hrpB)
Enzymes [BR:
ciq01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
FD428_17510 (hrpB)
Messenger RNA biogenesis [BR:
ciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FD428_17510 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
CON_HrpB
DEAD
Helicase_C
AAA_22
HA2_N
AAA_19
Motif
Other DBs
NCBI-ProteinID:
QCQ72712
LinkDB
All DBs
Position
complement(3666269..3668743)
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AA seq
824 aa
AA seq
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MLQCSAKNVNPLEPFVTSLPVAAVLPELLAALESAPQVLLTAPTGAGKSTWLPLQFLTHK
GIQGRIILLEPRRLAARNVAQRLAELLNEKPGETVGYRMRAQSCVGPQTRLEVVTEGVLT
RMIQRDPELNGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDNGKLQ
QRLPDAPQVVSEGRAWPVERRYQSLPAQLRFDEAVAIATADLLRHETGSLLLFLPGVGEI
LRVQEYLAARVADDVLLCPLYGALSLEAQRKAILPAPRGMRKVVLATNIAETSLTIEGIR
LVVDSAQERVARYDVRTGLTRLITQRVSQASMTQRAGRAGRLEPGVCVHLLAKEQAERAA
AQSEPEILQSDLSGLLLELLQWGCSDPVQLNWLDLPPSANVQAARRLLQMLNALDGERLS
ATGQKMARLGNDPRLAAMLVSAGNDSEKATAAKLAAILEEPPRAGNTDLSVAFSRQQPGW
QQRSQQLLKRLNGRGGEVDGTMLAPLLAQAFADRIARRRGQEGRYQLANGMGAVLDADDA
LGRHEWLIAPLLLQGSASPDARILLALPLDIEALIQACPALLQQSDTVEWDDAQGTLKAL
RRMRIGQLTVKVQPLAKPSEEELHQAMLNGIRDKGLSVLNWTPEAEQFRLRLLCAAQWLP
EYDWPAVDDASLLATLESWLLPHMTGVHTLRALKALNITLALRGLLDWSMLQRLDSELPA
HYTVPTGSRIAIRYHEDNPPALAVRMQEMFGEANTPAIAQGRVPLVLELLSPAQRPLQIT
RDLSAFWQGAYREVQKEMKGRYPKHVWPDDPANTAPTRRTKKYS
NT seq
2475 nt
NT seq
+upstream
nt +downstream
nt
atgctacaatgcagcgcgaagaatgttaaccctctggagccatttgtgacgtcgttgccc
gttgccgccgtactgcccgaattacttgccgcgcttgaaagcgcgccccaggttttgctc
accgccccaaccggcgcagggaaatcgacctggctgccgttgcagtttctgacgcataaa
ggcattcaggggcgaattatcctgctggagccgcgccgcctggcggcacgcaatgtggcg
cagcggctggcggaactcctgaacgagaagcccggcgagacggtcggttatcggatgcgc
gcgcaaagctgtgttggcccgcagacgcggcttgaagtggtgacggaaggggtgctgaca
agaatgatccagcgcgatcccgagctgaacggcgtcgggctggtgatcctcgatgaattt
catgagcgtagtttgcaggcggatctggcgctggccctgctgctggacgtgcagcaaggg
ctgcgtgacgatctgaaactgctgatcatgtctgcgacgctggacaacgggaagctgcaa
cagcgccttcctgatgcgccgcaggtggtgtctgaggggcgtgcctggcccgttgagcgt
cgctaccagtcacttccggcccaactgcgttttgatgaggcggtggccatcgccacggca
gatttgctgcgtcacgaaaccggctctctgctgctgtttttaccgggcgttggggaaatt
ctgcgcgtacaggaatacctggccgcgcgcgtggcggatgatgtgctgttatgcccgctg
tatggcgcgttgtctctggaggcgcagcgtaaagcgatactgcctgcgccgcgcgggatg
cgcaaagtcgtgctggcgaccaatattgctgaaaccagtttaaccatcgagggtatccgt
ctggtggtggacagcgcgcaggagcgcgtggcgcgctatgacgtgcgaaccggcctgacg
cggctgattacccagcgcgtcagtcaggcctccatgacgcagcgagccggacgcgccggg
cgtctggaaccgggcgtgtgtgttcacctgctggcgaaagagcaggcggaaagggcggcg
gcgcaaagcgagccggagattttacaaagcgatctgtccggtttactgctggagctgctg
caatggggatgcagcgatcccgtgcagctaaactggctggaccttcccccgtctgccaac
gtgcaggcagcccggcggctgttgcagatgctgaatgcgctggatggtgagcggctgagc
gcgacggggcagaaaatggcgcggcttggcaacgacccccgtctggcggcgatgctggtc
agcgccggcaatgacagtgaaaaggcgacagcggcgaaactggcggcgattctggaggag
ccgccacgcgcgggcaataccgacctcagcgtggcgttttcgcgccagcaaccgggctgg
cagcagcgtagccagcagctcctgaaacggctcaacgggcgaggcggcgaagtggacggc
acgatgctggcgccgctgcttgcgcaggcgtttgccgatcgtattgcgcgtcgacgcggt
caggaagggcgctatcaactggcgaatggcatgggcgcggtgcttgacgccgatgacgcg
ctgggtcgccatgagtggcttatcgcaccgttgctgttgcaggggagcgcgtcgccggat
gcccgtattctgctggctttaccgctggatattgaggcgcttattcaggcatgtccggcg
ctgttgcagcagtccgacacggtagagtgggacgacgcgcagggaacgttaaaggcgctg
cgccgaatgcgcatcgggcaactgacggtaaaagttcagccgctggctaagccttcggaa
gaggaactgcaccaggcgatgctcaatggcattcgcgataaagggctaagtgtgctcaac
tggacgccggaggctgaacagttccgcctgcgtctgctgtgcgcggcgcaatggttgccg
gagtacgactggcctgccgttgatgacgcttctcttctggctacgctggaaagctggctg
ctgccgcacatgacgggcgttcatacgctgcgcgccctgaaagccctgaatattaccctg
gcgttacgtggcctgctggactggtctatgctgcaacgtctggatagtgagctgcccgcg
cattacactgtgccgacgggaagccggatagccattcgttatcacgaagataacccgcca
gcgctggcggtcagaatgcaggagatgtttggcgaagcaaatacgcctgctatcgcgcag
gggcgcgtgccgctggtgctggagttgctctcaccggctcaacgcccgctacagattacg
cgcgatttaagcgcgttctggcagggagcgtaccgcgaggtacaaaaagagatgaaaggg
cgttatcccaaacatgtctggccggacgatccggcgaataccgcgccgacgcggcgcacg
aagaagtattcatga
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