Citrobacter sp. TBCP-5362: FD428_21355
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Entry
FD428_21355 CDS
T10692
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ciq Citrobacter sp. TBCP-5362
Pathway
ciq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ciq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FD428_21355 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ciq03021
]
FD428_21355 (rho)
03019 Messenger RNA biogenesis [BR:
ciq03019
]
FD428_21355 (rho)
Transcription machinery [BR:
ciq03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
FD428_21355 (rho)
Messenger RNA biogenesis [BR:
ciq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
FD428_21355 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
QCQ73418
LinkDB
All DBs
Position
complement(4496417..4497676)
Genome browser
AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgcaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgacggtgtgctggagatattgcaggat
ggatttggtttcctccgctctgcagacagctcctacctcgccggtcctgatgacatctac
gtttctcccagccaaatccgccgtttcaacctccgcactggtgacaccatttctggtaag
attcgcccgccaaaagaaggcgaacgttactttgcgctgttgaaagttaacgaagttaac
tacgacaaacctgaaaacgcccgtaataaaatcctctttgagaacttaacgccgctgcac
gcgaactcacgtctgcgtatggaacgtggtaacggttctactgaagatttaacggctcgc
gtactggatctggcttccccgattggccgtggtcagcgtggtctgatcgtcgcaccgccg
aaagcgggtaaaactatgctgttgcagaacatcgcgcagagcattgcttacaaccatcct
gactgcgtactgatggtgctgctgatcgacgagcgtccagaagaagtgaccgaaatgcag
cgtctggtaaaaggtgaagtggttgcttccaccttcgacgaaccggcatcccgtcacgtt
caggttgctgaaatggtaatcgagaaggcgaagcgtctggttgaacacaaaaaagacgtc
atcattctgctcgactccatcactcgtctggctcgcgcctacaacaccgtggttccggct
tccggtaaagtcctgaccggtggtgtggacgccaacgccctgcaccgtccgaagcgtttc
ttcggcgcggcgcgtaacgtggaagagggcggcagcctgaccatcatcgcaacggcgctg
atcgacaccggttctaagatggatgaagtgatctacgaagagtttaaaggcaccggtaac
atggagctgcacctctcccgtaagatcgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacgcgtaaagaagagctgctcaccactcaggaagagctacagaaaatg
tggatcctgcgcaaaatcatccatccgatgggtgaaatcgacgcgatggaattcctcatt
aacaagctggcaatgaccaagaccaacgacgacttcttcgacatgatgaagcgctcgtaa
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