Citrobacter sp. CFNIH10: C2U53_03965
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Entry
C2U53_03965 CDS
T05324
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03030
DNA replication
cir03430
Mismatch repair
cir03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
C2U53_03965
03430 Mismatch repair
C2U53_03965
03440 Homologous recombination
C2U53_03965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cir03032
]
C2U53_03965
03400 DNA repair and recombination proteins [BR:
cir03400
]
C2U53_03965
Enzymes [BR:
cir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
C2U53_03965
DNA replication proteins [BR:
cir03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
C2U53_03965
DNA repair and recombination proteins [BR:
cir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
C2U53_03965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
DNA_pol_IIIA_C
HHH_6
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
AUZ63061
LinkDB
All DBs
Position
complement(132255..135737)
Genome browser
AA seq
1160 aa
AA seq
DB search
MSEPRFVHLRVHSDYSMIDGLAKTGPLVKKAAALGMPALAITDFTNLCGLVKFYGAGHGA
GIKPIVGADFHVQSELMGDELTHLTVLAANNTGYQNLTLLISKAYQRGYGAAGPIIDRDW
LIELKEGLILLSGGRMGDVGRSLLRGNGALVDECVAFYEEHFPDRYFLELIRTGRPDEEN
YLHAAVALAEARGLPVVATNDVRFINSDDFDAHEIRVAIHDGFTLDDPKRPRNYSPQQYM
RSEEEMCELFSDIPEALENTVEIAKRCNVTVRLGEYFLPQFPTGDMTTEDFLVLKSKEGL
EERLAFLFPDEAVRKEKRPPYDERLDIELQVINQMGFPGYFLIVMEFIQWSKDNGVPVGP
GRGSGAGSLVAYALKITDLDPLEFDLLFERFLNPERVSMPDFDVDFCMEKRDQVIEHVAD
MYGRDAVSQIITFGTMAAKAVIRDVGRVLGHPYGFVDRISKLVPPDPGMTLAKAFEAEPQ
LPEIYEADEEVKALIDMARKLEGVTRNAGKHAGGVVIAPTKITDFAPLYCDEQGLHPVTQ
FDKNDVEYAGLVKFDFLGLRTLTIINWALEMINARREKNGEPPLDIAAIPLDDKKSFDML
QRSETTAVFQLESRGMKDLIKRLQPDCFEDMIALVALFRPGPLQSGMVDNFIDRKHGREE
ISYPDVQWQHESLKPVLEPTYGIILYQEQVMQIAQVLSGYTLGGADMLRRAMGKKKPEEM
AKQRSIFEDGAKKNGIDGELAMKIFDLVEKFAGYGFNKSHSAAYALVSYQTLWLKAHYPA
EFMAAVMTADMDNTEKVVGLVDECWRMGLKILPPDINSGLYHFHVNDDGEIVYGIGAIKG
VGEGPIEAIIEARNNGGYFRELFDLCARTDTKKLNRRVLEKLIMSGAFDRLGPHRAALMN
SLGDALKAADQHAKAEAIGQADMFGVLAEEPEQIEQSYASCQPWPEQVVLDGERETLGLY
LTGHPINQYLKEIERYVGGYRLKDMHPTERGKVTTAAGLVIAARVMVTKRGNRIGICTLD
DRSGRLEVMLFTDALDKYQQLLEKDRILIVSGQVSFDDFSGGLKMTAREVMDIDEAREKY
ARGLAISLTDRQIDDQLLNRLRQSLEPHRSGTIPVHLYYQRADARARLRFGATWRVSPSD
RLLNDLRGLIGSEQVELEFD
NT seq
3483 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaacctcgtttcgtccacctgcgggtgcacagcgactactccatgatcgatggg
ctggcaaaaaccgggccgctggtgaaaaaggcggccgcgttgggcatgcctgcgctggcg
atcaccgattttactaacctctgtggtctggtgaagttctacggagcgggtcatggcgca
gggattaaacccattgttggcgctgatttccatgttcagagcgagctgatgggggatgaa
ctgacgcatctgacagtgcttgccgccaataacaccgggtaccaaaatcttaccctgctg
atatccaaagcttatcagcgcggctatggcgcggcgggaccgatcatcgaccgtgactgg
ctgatcgaactgaaagaagggttgatcctgctttccggcgggcgcatgggtgacgtcggg
cgcagtctgctgcgcggcaacggcgcgctggttgatgagtgtgtcgcgttctatgaagaa
catttcccggatcgttacttccttgagcttatccgcactggtcgtcccgatgaagagaac
tatcttcatgctgccgttgcgctggcggaagcgcgcggtttgccggtggtcgccaccaac
gacgtgcgctttatcaacagtgatgactttgacgcgcatgaaattcgcgtcgctatccac
gatggtttcaccctcgacgatcccaaacgtccgcgtaattactcgccgcagcaatatatg
cgttcggaagaggagatgtgcgaactcttctctgatattccggaagcgttggaaaacacc
gttgaaattgccaaacgctgtaacgtaacggtacgtctgggcgagtatttcctgccgcag
ttcccgaccggcgatatgaccacggaagatttcctggtcctgaaatcgaaagaagggctg
gaagagcgtctggccttcttgttcccggatgaagccgtgcgaaaagaaaagcggccgcct
tacgatgaacgtctggatattgaactgcaggtgatcaaccagatggggttcccgggttac
ttcctcatcgtgatggaatttatccagtggtcgaaagataacggcgtgccggtagggcca
ggccgtggttccggtgcgggctcgctggtggcttacgcgctgaaaattaccgacctcgac
ccgctggaatttgacctgctgttcgaacgtttccttaacccggaacgtgtctcgatgcct
gacttcgacgttgacttctgtatggagaaacgcgaccaggtgattgaacacgtggccgac
atgtacggccgtgatgcggtatcgcagattattaccttcggtacgatggcggcgaaagcg
gtgatccgcgacgtgggtcgcgtactgggccacccgtacggctttgtcgatcgtatttcg
aaactggtgccccccgatccggggatgacgctggcgaaagccttcgaggctgaaccgcaa
ctgccagaaatctacgaggcagatgaagaggttaaagcgctgatcgacatggcgcgtaag
ctggaaggcgtgacccgaaacgccggtaaacacgctggtggtgtggttatcgccccgacg
aaaatcaccgattttgcgccgctgtactgtgatgaacaggggctgcacccggttacccag
tttgataaaaacgacgtggaatatgccggcctcgtgaagttcgacttccttggcttgcgt
acactcactatcattaactgggcgctggagatgattaacgcccgccgtgaaaagaacggt
gagccgccgctggatattgccgctatcccgctggacgataagaaaagcttcgatatgctg
caacgctcggaaaccacggcggtcttccagcttgaatcccgcggcatgaaagacctgatt
aagcgtctacagcctgactgcttcgaagatatgatagccctggtggccctgttccgtccg
gggccgttgcagtccgggatggtagataacttcatcgaccgtaagcacgggcgcgaagag
atctcctatccggatgtgcagtggcaacacgaaagcctgaaaccagtactggagccaacc
tacggcatcatcctgtatcaggaacaggtcatgcagattgcccaggtgctttctggctat
actcttggcggtgcggatatgctgcgtcgtgcgatgggtaagaaaaagccggaagagatg
gccaaacagcgctccatctttgaagacggcgcgaagaaaaacggtattgacggcgaactg
gcgatgaaaatcttcgacctggtggagaaattcgccggttacgggtttaacaaatcgcac
tctgctgcctacgcgctggtctcttaccagacgctgtggctgaaagcgcactatcctgct
gagtttatggcggcggtaatgactgccgatatggacaacaccgagaaggtggtggggctg
gtggatgaatgctggcgcatggggctgaaaatcctgccgccggatatcaactccgggctg
taccacttccacgtcaacgacgatggcgagattgtctacggtatcggcgcgatcaaaggc
gtgggtgaaggcccgatcgaggcgatcattgaggcgcgtaacaacggcggctatttccgt
gagctgtttgatctttgcgcgcgcaccgataccaaaaagctcaaccggcgggtgctggaa
aaattgatcatgtccggggcctttgacaggctggggccgcatcgtgctgcgctgatgaat
tcgctgggcgatgcgctgaaagccgccgatcagcacgcgaaagcagaagcgattggtcag
gcagatatgttcggcgtgctggcggaagagccggagcaaattgaacaatcctacgccagc
tgccagccgtggccagagcaggtggtgttagatggggaacgcgaaacgttggggttgtac
ctgacgggtcacccgatcaaccagtatttgaaagaaattgagcgctatgtcggaggctac
cggctgaaagacatgcatccgacagaacgtggtaaagtgaccacggctgcggggctcgtc
attgccgcaagggttatggtcaccaagcgcggcaatcgtatcggcatctgtacgctggat
gaccgttccggacgtctggaggtgatgttatttaccgacgccctggataaataccagcaa
ttgctggaaaaagaccgcatacttatcgtcagcggacaggtcagctttgatgacttcagc
ggggggcttaaaatgaccgcccgcgaagtcatggatattgacgaagcccgggaaaaatat
gctcgcgggcttgctatctcgctgacggacaggcaaattgatgaccagcttttaaaccga
ctccgtcagtctctggaaccccaccgctcggggacaattccagtacatctctactatcag
agggcggatgcacgtgcgcggttgcgttttggcgcgacgtggcgtgtctctccgagcgat
cgtttgcttaacgatctccgtggcctcattggttcggagcaggtggaactggagtttgac
taa
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