Citrobacter sp. CFNIH10: C2U53_05975
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Entry
C2U53_05975 CDS
T05324
Name
(GenBank) RNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03420
Nucleotide excision repair
cir03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
C2U53_05975
03430 Mismatch repair
C2U53_05975
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
cir03400
]
C2U53_05975
Enzymes [BR:
cir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C2U53_05975
DNA repair and recombination proteins [BR:
cir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
C2U53_05975
MMR (mismatch excision repair)
Other MMR factors
C2U53_05975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
Viral_helicase1
Motif
Other DBs
NCBI-ProteinID:
AUZ63428
UniProt:
A0A3S7D384
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All DBs
Position
complement(562672..563826)
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AA seq
384 aa
AA seq
DB search
MPNEFWIAGAGSGKTQKVIEDAIEVIKAGGRVLVVTYTMNNQAELRSRFVELYGKHSDDF
VVKGLFSFYLEDLVRPYQTAMFPERITSTMFTEHNPHLIPGTRKWHPKRGEKINGALNPL
HYLTPCKTKAYTGLLAKLATRISASTKNAPASRLKEIYQRIFFDEVQDLVGWDFDVIKAL
SKAMHNSICCVGDFRQTIYTTTFGHKAPETPEQKIQYFKDLNFSPFSLAKNRRCIQEICD
LADTIHPGIYEQTQSEVGEVPAEMAHHCGCFLIKPSQVNDYLDIFKPQVLRWSSPMGKGY
LPPGLTCHTFGSCKGLGFDRVLIISPEKHLKYLGGDLGVFDKDKTEESRNKLYVAITRAR
YSLAFVVEEEHLTNIKLPHWVRPL
NT seq
1155 nt
NT seq
+upstream
nt +downstream
nt
ttgcctaatgaattctggattgccggtgcaggatcaggaaaaacccaaaaagtcattgag
gatgccattgaagtcataaaggcgggcggacgcgtattggtcgtcacctacaccatgaac
aaccaggcagagctccgttctcgctttgtggaattgtacggcaaacacagcgatgatttt
gttgtgaaaggcctgttttcattttacctagaagacttagtaagaccatatcaaacggcc
atgtttccagagcgaatcacttctacaatgttcaccgagcataaccctcacctgatacct
ggtacgaggaaatggcatcccaaaagaggggaaaaaattaatggggcgctgaatcctctt
cattatctgacgccgtgcaaaaccaaagcttacactgggctgctggcgaagctggcaaca
agaatctccgcttcaacaaagaatgcccccgctagcagattgaaagagatttatcagagg
atcttttttgatgaggttcaggatttggttggatgggattttgacgttatcaaagcactc
agtaaggcaatgcataactctatttgctgtgtaggcgattttcgtcaaactatttacacg
accacgttcggccacaaggcaccggaaacacctgagcaaaagattcaatacttcaaagac
ctcaattttagtccgttctcgctggcgaagaatcgcagatgtatccaggaaatctgcgat
ctcgcggataccattcatcccggtatttatgaacaaacgcaatcagaggtgggagaagtt
cctgctgagatggcccatcactgcggttgttttctcataaaaccatctcaggtgaacgat
tatctcgatatattcaaacctcaagttttgcgatggtcatcgcccatgggaaaaggctat
ttgccaccaggtctcacctgtcacaccttcggctcctgtaaaggtctcggtttcgaccgc
gtactaattatttcaccggagaaacatctcaagtatctgggtggtgaccttggcgtgttc
gataaagataaaacggaggaatctagaaacaagctgtacgtggccattacccgagcccgt
tacagcctagcgtttgtcgttgaggaagagcatcttacaaatataaagctgccgcattgg
gttagacctctgtaa
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