Citrobacter sp. CFNIH10: C2U53_06020
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Entry
C2U53_06020 CDS
T05324
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
C2U53_06020
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cir03021
]
C2U53_06020
Transcription machinery [BR:
cir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
C2U53_06020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r1_1
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
DNA_ligase_A_N
Motif
Other DBs
NCBI-ProteinID:
AUZ63436
LinkDB
All DBs
Position
complement(568948..570792)
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AA seq
614 aa
AA seq
DB search
MEQNPQSQLKLLVTRGKEQGYLTYAEVNDHLPEDIVDSDQIEDIIQMINDMGIQVMEEAP
DADDLLLAENTTSTDEDAEEAAAQVLSSVESEIGRTTDPVRMYMREMGTVELLTREGEID
IAKRIEDGINQVQCSVAEYPEAITYLLEQYDRVEAEEARLSDLITGFVDPNAEEDLAPTA
THVGSELSQEDLDDDEDEDEEEDDDSSDDDNSIDPELAREKFGELRTQYEVTRDTIKAKG
RSHADAQAEILKLSEVFKQFRLVPKQFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKMPK
KNFITLFTGNETSETWFNAAIAMNKPWSEKLHDVADDVHRGLQKLQQIEEETGLTIEQVK
DINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKF
EYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPT
PEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDTTLELPLDSATTES
LRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLR
HPSRSEVLRSFLDD
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atggagcaaaacccgcagtcacagctgaagcttcttgtcacccgtggtaaggagcaaggc
tatctgacctatgccgaggtcaatgaccatctgccggaagatatcgtcgattcagatcag
attgaagatatcatccaaatgatcaacgacatgggtattcaggtgatggaagaagcaccg
gatgccgatgatctgctacttgctgaaaacaccaccagtaccgacgaagacgcggaagaa
gcggccgcgcaagttctgtccagcgtagagtcagaaatcggtcgtaccactgacccggtt
cgcatgtacatgcgtgaaatgggtaccgttgaactgttgacccgcgaaggcgaaatcgat
attgcgaaacgcatcgaagacgggatcaaccaggttcagtgctccgttgccgaatatcca
gaagccattacctatctgcttgagcagtacgatcgtgttgaggctgaagaagcccgtctg
tccgatctgatcactggttttgtcgatccgaacgcggaagaagatttggcgccgaccgcc
actcacgtcggctctgagttgtctcaggaagacctggatgacgacgaggacgaagacgag
gaagaagacgacgacagcagcgatgacgacaacagcatcgaccctgagctggcgcgcgag
aagttcggtgaactgcgtacgcagtacgaagtcacgcgtgacaccatcaaagcgaaaggt
cgtagccacgccgatgctcaggctgagatcctgaagctgtctgaagtgttcaaacagttc
cgtctggtgccgaagcagttcgactacctggtgaacagcatgcgcgtcatgatggacagg
gttcgtacccaggaacgtctgatcatgaagctctgcgttgagcagtgcaaaatgccgaag
aagaacttcatcaccctgttcaccggcaacgaaaccagtgaaacctggttcaacgcggct
atcgcgatgaacaaaccgtggtccgaaaaactgcacgatgtggctgatgacgttcaccgt
ggcctgcagaagctgcaacagattgaagaagagaccggcctgactatcgagcaggtcaaa
gacatcaaccgtcgtatgtccatcggcgaagcgaaagcgcgtcgtgcgaagaaagagatg
gttgaagccaacttacgtctggttatctctatcgccaagaaatacaccaaccgtggtctg
cagttcctggatctgattcaggaaggcaacatcggtctgatgaaagcggtcgataagttc
gaataccgtcgtggttacaagttctccacctacgcaacctggtggatccgtcaggcgatc
acccgctctatcgcggatcaggcgcgcaccatccgtattccggtgcatatgattgagaca
atcaacaaactcaaccgtatctctcgccagatgctgcaagagatgggtcgcgagccgacg
ccggaagagctggccgagcgcatgctgatgccggaagacaagatccgtaaagtgctgaag
atcgctaaagagccgatctccatggaaaccccgatcggtgacgatgaagattcgcatctg
ggtgatttcatcgaggatactaccctcgagctgccgctggattctgcgaccactgaaagc
ctgcgtgcagcaacacacgacgtactggccggtttgaccgcgcgtgaagcgaaagtcctg
cgtatgcgtttcggtatcgatatgaacaccgaccacacgctggaagaagtaggtaaacag
ttcgacgtgacccgcgaacgtatccgtcagatcgaagcgaaggcactgcgtaaactgcgt
cacccgagccgttctgaagtcctgcgtagcttcctggacgattaa
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