Citrobacter sp. CFNIH10: C2U53_06495
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Entry
C2U53_06495 CDS
T05324
Name
(GenBank) DEAD/DEAH family ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U53_06495
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cir03019
]
C2U53_06495
03009 Ribosome biogenesis [BR:
cir03009
]
C2U53_06495
Enzymes [BR:
cir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U53_06495
Messenger RNA biogenesis [BR:
cir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U53_06495
Ribosome biogenesis [BR:
cir03009
]
Prokaryotic type
rRNA helicases
C2U53_06495
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
DeaD_C
CMS1
AAA_22
Cas3-like_C_2
DRTGG
Motif
Other DBs
NCBI-ProteinID:
AUZ63522
LinkDB
All DBs
Position
complement(667332..669260)
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AA seq
642 aa
AA seq
DB search
MMSYVDWPPLILRHTYYMAEFETTFADLGLKAPILEALNDLGYEKPSPIQAECIPHLLGG
RDVLGMAQTGSGKTAAFSLPLLNNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG
VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSRLSGLVLDEADEMLR
MGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVTTRPDISQS
YWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERSGYNSAALNGDMNQAL
REQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGRAG
RALLFVENRERRLLRNIERTMKLTIPEVELPNAELLGKRRLEKFAAKVQQQLESSDLDQY
RALLAKLQPTAEDEELDIETLAAALLKMAQGERPLILPPDAPMRPKREFRDRDDRGPRDR
NDRGPRGDREDRPRRERRDVGDMQLYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIK
LFASHSTIELPKGMPGEVLQHFTRTRILNKPMNMQLLGDAQPHTERRGGGRSFGGERREG
GRGFGGERREGGRGDGRRFSGERREGSRAPRREEGSSRRRDA
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgatgagttatgtagactggccgccattaattttgaggcacacgtactacatggctgaa
ttcgaaaccacttttgcagatctgggcctgaaggctcctatccttgaagcccttaacgat
ctgggttacgaaaaaccatctccaatccaggcagagtgcattccgcatctgctgggcggt
cgcgatgttctgggtatggcccagaccggtagcggcaaaacggcagcgttctctttaccg
ctgctcaacaatcttgatcctgagctgaaggcacctcagattctggtgctggccccgacc
cgcgaactggcggttcaggtagccgaagcgatgacggatttctctaaacacatgcgcggc
gtgaacgtggttgccctgtacggcggccagcgttatgacgtgcagttacgcgccctgcgt
caagggccgcagatcgtcgtcggtacgccgggtcgtctgcttgatcacttaaaacgcggt
accctggatctgtctcgtctgagcggtctggtactggacgaagccgatgaaatgctgcgt
atgggcttcatcgaagacgttgaaaccatcatggcgcagatcccggaaggtcatcagacc
gctctgttctctgccaccatgccggaagcgattcgtcgcattacccgccgcttcatgaaa
gagccgcaggaagtgcgcattcagtccagcgtcactacccgtccggacatcagccagagt
tactggactgtctggggcatgcgtaaaaacgaagcgctggtgcgtttcctggaagcggaa
gattttgatgcggcgattatcttcgttcgtaccaaaaacgcgactctggaagtggctgaa
gcgctggagcgtagcggctataacagcgccgcgctgaacggcgacatgaaccaggcgctg
cgtgagcagaccctggaacgtctgaaagacggtcgtctggatatcctgattgcaaccgac
gttgcggcccgtggcctggacgttgagcgtatcagcctggtcgtaaactacgatatccca
atggattccgagtcttacgttcaccgtatcggtcgtaccggtcgtgcgggtcgtgcaggc
cgtgcgctgctgttcgttgagaaccgcgagcgtcgtctgctgcgtaacattgaacgcacg
atgaagctgaccattccggaagttgaactgccgaacgctgaactgttgggcaaacgtcgt
ctggaaaaatttgcggctaaagtacagcagcagctggaaagcagcgatctggatcagtac
cgtgcgctgttggcgaaactgcagccgacggccgaagacgaagagctggatatcgaaact
ctggctgccgctctgcttaagatggcgcagggcgaacgtccgctgattctgccgccagat
gcgccgatgcgtccgaagcgtgagttccgcgaccgtgacgatcgtggtccgcgtgaccgt
aacgatcgtggcccgcgtggcgaccgtgaagaccgtccgcgtcgtgaacgtcgtgacgtt
ggcgatatgcagctgtaccgcattgaagtgggccgtgatgatggcgttgaagttcgtcat
atcgttggcgcgattgcaaacgaaggcgacatcagcagccgttacattggtaacatcaag
ctgttcgcttcgcactccaccatcgaactgccgaaaggtatgccgggtgaagtcctgcag
cactttacgcgcactcgcatcctgaacaagccgatgaacatgcagctgctgggcgatgca
cagccgcacactgaacgccgtggcggtggtcgtagctttggtggcgagcgtcgtgaaggc
ggtcgcggtttcggcggtgagcgtcgtgaaggtggtcgtggtgatgggcgtcgtttcagc
ggcgaacgtcgcgaaggtagccgtgcaccacgtcgtgaagaaggctccagccgtcgtcgt
gacgcgtaa
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