Citrobacter sp. CFNIH10: C2U53_06940
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Entry
C2U53_06940 CDS
T05324
Name
(GenBank) RNase E specificity factor CsrD
KO
K18765
RNase E specificity factor CsrD
Organism
cir
Citrobacter sp. CFNIH10
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cir03019
]
C2U53_06940
Messenger RNA biogenesis [BR:
cir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
C2U53_06940
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Paralog
Gene cluster
GFIT
Motif
Pfam:
EAL
GAPES4
GGDEF
Motif
Other DBs
NCBI-ProteinID:
AUZ63598
UniProt:
A0A3S7D3Q6
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Position
complement(756613..758553)
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AA seq
646 aa
AA seq
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MRLTTKFSAFVTLLTGLTIFVTLIGCSLSFYNAIQYKMAHRVQAVATAIDTHLVSRDFKQ
LTSQIDELMVSADVVRVDLLQGEKVIYSQTRNSSYRPVGTSNLFRELSVPLMKHPGMTMD
LVYQDPMGNYFHSLMTTAPLTLAIGFIVLMLFLSVRWLQRQLSGQELLEMRSTRILNGER
GASVRGTVYEWPARTSSALDMLLSEIQSAQEQRSRLDTLIRSYAAQDTKTGLSNRLFFDN
QLATLLDDQEKIGAHGVVMMIRLPDFNLLRDSWGRNLAEEELFSLINLLSTFMMRFPGSL
LARYHRSDFAVLLPHRTLKEAESVAGQLLKAVDALPTNKMLDRDDMVHIGICAWRSGQST
EQVMEHAEAATRNAVLQGGNSWTVYDDSLPEKGRGNVRWRTLIEQMLSRGGPRIYQKPAV
TRDGHVHHRELMCRIFDGNEEVSTAEYMPMVLQFGLSEEYDRLQISRVIPLLNYWPEENL
AMQVTVESLIRPRFQRWLRDTLMQCEKSQRKRIIIELAEADVGQHISRLQPVIRLVNALG
VRVAVTQAGLTLVSTSWIKELNVELIKLHPSLVRNIEKRTENQLLVQSLVEACSGTSTQV
YATGVRSRGEWQTLTARGVSGGQGDFFAASQPLDTNVKKYSQRYSV
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgcgattaacgacgaaattctcagcttttgtcacgctgctcaccgggttaacgatcttt
gtcaccctgatcggctgctcgctgagcttttacaacgccatccagtacaagatggcccat
cgtgtccaggcggtggcgacagccattgacacgcatcttgtttcacgcgatttcaaacag
ttaacatcgcaaattgacgaactgatggtgtctgccgacgtcgtacgcgtcgatctgctg
cagggtgaaaaggtcatttatagccaaacccgtaacagtagctatcgcccggttggcacc
agtaatctctttcgcgagctctcggttccgctgatgaagcacccgggaatgacgatggat
ctggtctatcaggatccgatgggcaactattttcattcactgatgacgacggcaccgctc
acgctggccattggttttattgtactgatgctgtttctgtcggtacgttggctacagcgt
caactttccggtcaggaactgctggagatgcgttcgacgcgaattttgaatggagaacgg
ggagccagtgtacggggtacggtctatgaatggccggcgcgcaccagtagcgcgctggat
atgctgttgtccgaaatccagagcgcccaggagcagcggagccgtctcgatacgctgatt
cgctcttacgccgcgcaggacaccaaaaccggcctcagcaatcggctcttttttgacaac
caactggcgacgttgctggacgatcaggagaagatcggcgcgcatggcgtggtgatgatg
attcgcctgccggactttaacctgttgcgcgacagttgggggcgtaacctcgccgaagaa
gaactgtttagtctgatcaatttattgtccacttttatgatgcgttttccggggtcgcta
ctggcgcgctaccatcgcagcgactttgccgttttactgccgcaccgcactttgaaagag
gcggaaagcgtagccggacaacttttaaaagcagtcgatgcacttccgactaataaaatg
ctcgatcgtgacgatatggtacatatcggcatttgcgcctggcgtagcgggcagtcgacg
gaacaggtgatggaacatgcagaggcggcgacccgcaatgctgtgttgcagggcggaaat
agctggacggtgtatgacgactcgttgccggaaaaagggcgtggcaacgtgcgctggcga
acgctgattgagcagatgctcagccgcggcggcccgcgaatttatcagaaaccggccgtc
acccgggacggacatgtgcatcatcgggaactgatgtgccgcatctttgatggtaatgaa
gaggtcagcacggcggaatacatgccgatggtgttacagttcggtttatcagaagagtat
gaccgcttacaaataagccgcgtcatcccgctgctaaactactggccggaagagaatctg
gcgatgcaggtgacggtagagtcgctgattcgtccacgttttcagcgttggttacgcgat
accttgatgcagtgtgaaaaatcgcaacgaaaacgcataattattgaacttgcggaggcg
gatgtaggtcaacacatcagccggttgcagcccgttatccgcttagtgaatgcattaggc
gttcgggttgccgtcacgcaggcgggcttaacgctggtgagtaccagctggattaaggaa
ctcaatgtggaattgatcaagctccatccgagtctggtcaggaacattgagaagcgaacg
gaaaaccagttgctggttcaaagcctggtggaggcgtgctcaggcaccagcacccaggtt
tacgcaacgggtgtacgttcgcgcggtgagtggcagacgctgacagcgcgtggtgtttcc
ggtggacagggggatttttttgctgcctcccagccgctggataccaatgtgaaaaaatat
tctcaaagatactcggtttaa
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