Citrobacter sp. CFNIH10: C2U53_10105
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Entry
C2U53_10105 CDS
T05324
Name
(GenBank) ATP-dependent RNA helicase RhlB
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U53_10105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cir03019
]
C2U53_10105
Enzymes [BR:
cir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U53_10105
Messenger RNA biogenesis [BR:
cir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U53_10105
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CCDC138_C
ERCC3_RAD25_C
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AUZ64162
UniProt:
A0A3S7D5C3
LinkDB
All DBs
Position
complement(1386714..1387982)
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AA seq
422 aa
AA seq
DB search
MSKTHLTEQKFSDFALHPKVIEALENKGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKT
MAFLTSTFHYLLSHPAIDDRKVNQPRALIMAPTRELAVQIHADAEPLAQTTGLKLGLAYG
GDGYDKQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMYDLGFIKDIR
WLFRRMPPANQRLNMLFSATLSYRVRELAFEQMNNAEYVEVEPEQKTGHRIKEELFYPSN
EEKMRLLQTLIEEEWPDRAIIFANTKHRCEDIWGHLAADGHRVGLLTGDVAQKKRLRILD
EFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAGASGHSISLA
CEEYALNLPAIETYIGHSIPVSKYNPEALMNNLPKPLRLTRTRPGNGPRRSGGAPRNRRR
SG
NT seq
1269 nt
NT seq
+upstream
nt +downstream
nt
atgagcaaaacacatttaacagaacagaagttttccgacttcgccctgcacccaaaggtt
atcgaagcccttgaaaataaaggctttcacaactgcacgcccattcaggccctcgcactg
ccgcttacgctggctggtcgcgatgttgcagggcaggcgcaaaccggtaccggaaaaacg
atggcgttcctgacgtcaacgtttcattatcttctctctcatcccgcgattgacgatcgc
aaggtgaaccagccacgcgccttaattatggcgccgacgcgtgagttagccgtgcagatc
cacgctgatgccgagccgctggcacagacgaccggtctgaagctgggtctcgcttacggc
ggtgacggttacgacaaacagctaaaagtgctggaaagcggcgtcgatattctcatcggc
accacgggtcgtctgatcgactacgcgaaacagaatcacatcaacctgggcgccatccag
gtggtggtcctcgatgaagccgatcgcatgtacgatctgggctttattaaagatattcgc
tggctgttccgccgcatgccgccggccaaccaacgcctgaacatgttgttctctgctacc
ctctcttaccgcgtgcgtgaactggcgttcgaacagatgaacaacgccgaatacgttgaa
gtcgagccggaacaaaaaacgggtcaccgtattaaagaagagcttttctatccgtctaac
gaagagaaaatgcgcttactgcaaacgctgatcgaagaagagtggccggatcgcgccatc
atcttcgcgaacaccaaacaccgctgcgaagatatctggggtcatcttgccgccgatggt
catcgcgttggtttgctgactggcgatgtggcgcagaaaaaacgtctgcgtattctcgac
gaatttacccgtggcgatctggatattctggtcgcaaccgacgttgccgcgcgcggcctg
cacattcctgccgtgacgcacgtatttaactacgatctgccggacgattgcgaagactac
gtacaccgcatcggtcgtacgggccgtgctggcgcaagcggtcactcgatcagcctggcc
tgtgaagagtacgccctgaacctacctgcgattgaaacctacattggtcactcgattccg
gtgagtaaatacaacccggaagcgttgatgaacaatctgccgaagccgctgcgcctgacg
cgtacgcgccctggcaatggcccgcgccgctctggcggtgctccgcgtaatcgtcgtcgt
tcaggttaa
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