Citrobacter sp. CFNIH10: C2U53_10120
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Entry
C2U53_10120 CDS
T05324
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U53_10120 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cir03021
]
C2U53_10120 (rho)
03019 Messenger RNA biogenesis [BR:
cir03019
]
C2U53_10120 (rho)
Transcription machinery [BR:
cir03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
C2U53_10120 (rho)
Messenger RNA biogenesis [BR:
cir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
C2U53_10120 (rho)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
AAA_22
AAA_25
S1CSD-TOTE-2
AAA
FtsK_SpoIIIE
Motif
Other DBs
NCBI-ProteinID:
AUZ64164
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All DBs
Position
1388892..1390151
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AA seq
419 aa
AA seq
DB search
MNLTELKNTPVSELITLGENMGLENLARMRKQDIIFAILKQHAKSGEDIFGDGVLEILQD
GFGFLRSADSSYLAGPDDIYVSPSQIRRFNLRTGDTISGKIRPPKEGERYFALLKVNEVN
YDKPENARNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPP
KAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHV
QVAEMVIEKAKRLVEHKKDVIILLDSITRLARAYNTVVPASGKVLTGGVDANALHRPKRF
FGAARNVEEGGSLTIIATALIDTGSKMDEVIYEEFKGTGNMELHLSRKIAEKRVFPAIDY
NRSGTRKEELLTTQEELQKMWILRKIIHPMGEIDAMEFLINKLAMTKTNDDFFDMMKRS
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atgaatcttaccgaattaaagaatacgccggtttctgagctgatcactctcggcgaaaat
atggggctggaaaacctggctcgtatgcgtaagcaggacattatttttgccatcctgaag
cagcacgcaaagagtggcgaagatatctttggtgacggtgtgctggagatattgcaggat
ggatttggtttcctccgttctgcagacagctcctacctcgccggtcctgatgacatctac
gtttcccccagccaaatccgccgtttcaacctccgcactggtgataccatctctggtaag
attcgcccgccaaaagaaggcgaacgctactttgcgctgctgaaagttaacgaagttaac
tacgacaaaccggaaaacgcccgtaataaaattctcttcgaaaacttaaccccgctgcac
gcaaactctcgtctgcgtatggaacgtggtaacggctctaccgaagacttaacggcgcgc
gttttggatctggcttcaccaatcggtcgtggtcagcgtggtctgatcgtcgcaccgccg
aaagccggtaaaaccatgctgctgcaaaacattgcgcagagcatcgcttacaaccaccct
gactgtgtgttgatggtgctgctgattgacgaacgtccggaagaagtgaccgagatgcaa
cgtctggtgaaaggtgaagttgttgcttctaccttcgacgaaccggcatcccgtcacgtt
caggtagcggaaatggtgatcgagaaagcgaaacgtctggttgaacacaaaaaagacgtt
atcattctgctcgactccatcacccgtctggcacgtgcatacaacaccgtggttccggct
tccggtaaagtgctgaccggtggtgtggacgctaacgctctgcatcgtccgaagcgtttc
ttcggtgcggcgcgtaacgtggaagagggcggcagcctgaccatcatcgcaacggcgttg
atcgataccggctctaagatggatgaagtcatctacgaagagtttaaaggcaccggtaac
atggaactgcacctctctcgtaagattgctgaaaaacgcgtcttcccggctatcgactac
aaccgttccggtacccgtaaagaagagctgctcaccactcaggaagagctgcagaaaatg
tggatcctgcgcaagattattcacccgatgggcgaaatcgacgcaatggaattcctcatt
aataaactggcgatgaccaaaactaacgacgacttcttcgacatgatgaagcgctcgtaa
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