Citrobacter sp. CFNIH10: C2U53_11295
Help
Entry
C2U53_11295 CDS
T05324
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C2U53_11295 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cir03021
]
C2U53_11295 (rpoC)
03400 DNA repair and recombination proteins [BR:
cir03400
]
C2U53_11295 (rpoC)
Enzymes [BR:
cir01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C2U53_11295 (rpoC)
Transcription machinery [BR:
cir03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C2U53_11295 (rpoC)
DNA repair and recombination proteins [BR:
cir03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C2U53_11295 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
EAD9
Motif
Other DBs
NCBI-ProteinID:
AUZ64372
LinkDB
All DBs
Position
1635245..1639468
Genome browser
AA seq
1407 aa
AA seq
DB search
MKDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSL
PSRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDEFDAKM
GAEAIQALLKSMDLEQECETLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERIYRAG
LASLHARVKVRITEYEKDANGEFVAKTSLIDTTVGRAILWMIVPKGLPFSIVNQALGKKA
ISKMLNTCYRILGLKPTVIFADQTMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAEAE
VAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEQQVSFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTLEGITMTPVIEGGDVKEPLRDRVL
GRVTAEDILKPGTADILVPRNTLLHEQWCDLLEANSVDSVKVRSVVSCDTDFGVCAHCYG
RDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSIRL
SNAKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGSVMAKGDGEQVAGGETVANW
DPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTTGGKDLRPALKI
VDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARVPQESGGTKDITGGLPR
VADLFEARRPKEPAILAEISGIISFGKETKGKRRLVITPVDGSDPYEEMIPKWRQLNVFE
GERVERGDVVSDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHIEVIVRQM
LRKATIESAGSSDFLEGEQVEYSRVKIANRELEANGKVGATFSRDLLGITKASLATESFI
SAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRRAAGELPA
APQVTAEDASASLAELLNAGLGGSDNE
NT seq
4224 nt
NT seq
+upstream
nt +downstream
nt
gtgaaagacttattaaagtttctgaaagcgcaaactaaaaccgaagagtttgatgcgatc
aaaattgctctggcttcgccagacatgatccgttcatggtctttcggtgaagttaagaag
ccggaaaccattaactaccgtacgttcaaacctgagcgtgacggccttttctgcgcccgt
atctttgggccggtaaaagactatgagtgcctgtgcggtaagtacaagcgcctgaaacac
cgcggtgtgatctgtgagaagtgcggcgttgaagtgacccagactaaagtacgccgtgag
cgtatgggccacatcgagctggcgtccccgactgctcacatctggttcctgaaatctctg
ccgtcccgtatcggcctgctgctcgatatgccgctgcgcgatatcgaacgcgtactgtac
ttcgaatcctatgtggttatcgaaggcggtatgaccaatctggaacgccagcagatcctg
actgaagaacagtatctggatgcgctggaagagttcggtgacgaatttgacgcgaagatg
ggtgcggaagcgatccaggccttgctgaagagcatggatctggagcaagagtgtgaaact
ctgcgtgaagagctgaacgaaaccaactccgaaaccaaacgtaagaagctgaccaagcgt
atcaagctgctggaagcgttcgttcagtctggcaataagccggagtggatgatcctgacc
gttctgccggttctgccgccagatctgcgtccgctggttccgctggatggtggtcgtttc
gccacgtcggatctaaacgatctgtatcgtcgcgtgatcaaccgtaacaaccgtctgaaa
cgtctgctggatctggctgcgccggatatcatcgtacgcaacgaaaaacgtatgctgcag
gaagcggttgacgccctgctggataacggtcgtcgcggtcgtgcgatcactggttctaac
aaacgtcctctgaaatctttggccgacatgatcaaaggtaagcagggtcgtttccgtcag
aacctgctcggtaagcgtgttgactactccggtcgttctgttatcaccgtaggtccatac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaaaccgttc
atctacggcaagctggaactgcgtggcctcgccaccaccatcaaagccgcgaagaaaatg
gttgagcgtgaagaagctgtcgtttgggatatcctggacgaagttatccgcgaacacccg
gtactgctgaaccgtgcaccaacactgcaccgtctgggtatccaggcgtttgaacctgtt
cttatcgaaggtaaagctatccagctgcacccgctggtttgtgcggcctataacgccgac
ttcgatggtgaccagatggctgttcacgtaccgctgacgctggaagcccagctcgaagcg
cgtgcgctgatgatgtctaccaacaacatcctgtccccggcgaacggcgaacctatcatc
gttccgtctcaggacgttgtactgggtctgtactacatgacccgtgactgtgttaacgcc
aaaggcgaaggcatggtgctgactggcccgaaagaagctgagcgtatttatcgcgctggc
ctggcctctctgcatgcgcgcgttaaagtgcgtatcaccgaatacgaaaaagatgctaac
ggcgagttcgttgcgaaaaccagcctgattgatacgacggtaggtcgtgcaatcctgtgg
atgatcgtaccgaaaggtctgcctttctccatcgtcaaccaggcgctgggcaagaaagcc
atctccaagatgctgaacacttgctaccgtattctgggcctgaaaccgaccgttattttt
gcggaccagacgatgtacaccggctttgcttatgcagcgcgttcaggtgcatccgttggt
atcgatgacatggtcatcccggagaaaaaacacgagatcatctctgaagcggaagctgaa
gtggctgagatccaggaacagttccagtctggtctggttaccgccggcgaacgttacaac
aaagtgatcgatatctgggctgcggcgaacgatcgcgtttccaaagcgatgatggataac
ctgcaaaccgaaaccgtgattaaccgtgacggtcaggaagagcagcaggtttccttcaac
agcatctacatgatggccgattccggtgcgcgtggttctgctgcacagattcgtcagctg
gcgggtatgcgtggtctgatggcgaagccggatggctccatcatcgaaacgccgatcacc
gcgaacttccgtgaaggtctgaacgtactccagtacttcatctccacgcacggtgcgcgt
aaaggtctggcggataccgcactgaaaacagcgaactccggttacctgacgcgtcgtctg
gttgacgttgcacaggatctggttgttaccgaagacgactgcggcacgctggaaggtatc
accatgaccccggttatcgagggtggtgatgttaaagagccattgcgcgatcgcgttctg
ggtcgtgtaaccgcagaagacattctgaagccgggtacggcggatattctggttccgcgc
aacacgctgctgcacgaacagtggtgtgatctgctggaagcaaactccgttgactctgtg
aaagttcgctctgttgtatcctgtgacaccgactttggtgtatgtgcgcactgctatggt
cgtgacctggcgcgtggccacatcatcaacaaaggtgaagctatcggcgttatcgcggca
cagtccatcggtgagccgggtacacagctgacgatgcgtacgttccacatcggtggtgcg
gcatctcgtgcggctgctgaatccagcatccaggtgaaaaacaaaggtagcatccgtctg
agcaatgcgaagtcggttgtgaactccagcggtaaactggtgatcacctcccgtaacact
gagctgaaactgatcgacgaattcggtcgtaccaaagaaagctataaagtgccttacggc
tctgtgatggcgaaaggtgatggtgagcaggttgccggcggtgaaaccgtagcaaactgg
gatccgcacactatgccggttatcacggaagtgagtggttttgtccgcttcactgacatg
atcgacggccagaccattacgcgtcagaccgacgagttaaccggtctgtcttctctggtg
gttctggattccgcagaacgtactaccggtggtaaagatctgcgtcctgcactgaaaatc
gttgatgctcagggtaacgacgtactgatcccgggtaccgacatgcctgcgcagtacttc
ctgccgggtaaagcgattgttcagttggaagatggcgtacagatcagttctggtgacacc
ctggcgcgtgttccgcaggaatccggcggtaccaaggacatcaccggtggtctgccgcgc
gttgcggacctgttcgaagcacgtcgtccgaaagagccggcaatcctggctgaaatcagc
ggtattatttccttcggtaaagaaaccaaagggaaacgtcgtctggttatcaccccggta
gacggtagcgatccgtacgaagagatgattccgaaatggcgtcagctcaacgtgttcgaa
ggtgaacgtgtagaacgtggtgacgtggtttccgacggtccggaagcaccgcacgacatt
ctgcgtctgcgtggtgttcatgctgtaactcgttacatcgttaacgaagttcaggacgta
taccgtctgcagggcgttaagattaacgataaacacatcgaagttatcgttcgtcagatg
ctgcgtaaagccaccatcgaaagcgctggtagctccgacttcctggaaggcgaacaggtt
gaatactcccgcgtcaagatcgctaaccgcgaactggaagcgaacggcaaagtgggcgcc
acgttctcccgcgatctgctgggtatcaccaaagcgtctctggcaaccgagtcgttcatc
tctgccgcatcgttccaggagaccacgcgtgtcctgaccgaagcagccgttgcgggtaaa
cgcgacgaactgcgtggcctgaaagagaacgttatcgtaggtcgtctgatcccggcgggt
accggttatgcgtaccaccaggatcgtatgcgtcgccgtgctgcgggtgaacttccggct
gcaccgcaggtgactgcagaagatgcctctgccagcctggcagaactgctgaacgcaggt
ctgggtggttctgacaacgagtaa
DBGET
integrated database retrieval system
