Citrobacter sp. CFNIH10: C2U53_13490
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Entry
C2U53_13490 CDS
T05324
Name
(GenBank) RNA polymerase subunit sigma-54
KO
K02688
transcriptional regulator, propionate catabolism operon regulatory protein
Organism
cir
Citrobacter sp. CFNIH10
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cir03000
]
C2U53_13490
Transcription factors [BR:
cir03000
]
Prokaryotic type
Helix-turn-helix
Other families
C2U53_13490
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
PrpR_N
Sigma54_activ_2
PAS
Mg_chelatase
PAS_9
AAA
AAA_5
AAA_7
Microp_apicomplexa_9
PAS_10
AAA_16
AAA_2
PAS_7
HTH_8
Bac_DnaA
AAA_6
Diguanyl_cycl_sensor
AAA_22
PAS_8
Motif
Other DBs
NCBI-ProteinID:
AUZ64769
UniProt:
A0A3S7D725
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Position
complement(2078163..2080076)
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AA seq
637 aa
AA seq
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MSHKTLPNLALITPYPALAAVVTEQCAGIFNCHVFHGSLEKAAGIARNLDPDFYDIIISR
GGTADYIDRVTKIPVVRILTSALDLLKSLTPLKKHPHKIAFFNYQNYLSDVNLVATALDV
EIEEFIFLSHADMVDKLKKCRARNFQTVAGGLPVSDTAEHYEMHGILIENGLESVNSALR
EAMAIVETTRRKQQDMARLEIILSSITEGIIVTNENNEIQIFNKSAENIFGLMASQVIGK
PVDTVIKNTRINQVLLTKSPEIREIMDLDNTSIITSRVPIFRGTQCIGVVCSFTDTPQIQ
KVERIIRGKLMKKGFTARYRFEHILTQNKHMESVIHLAKIYANTHSPVMIYGESGTGKEL
FAQSIHNQSKRHRGPFVAINCAAIPETLLESELFGYEGGSFTGARREGKEGLIELAHQGT
LFLDEIGELPLPIQSRLLRVLQEYEIMRVGGKDIIPVDVRIIGATNRSLEKMAEEGSFRG
DLYYRLNVLPLMVPPLRERDGDVRFLAEHFLEKSGCGHKLAQFIALFSTYNWPGNVRELN
FIIERLALLSAGFPDASLFEILNLTGFNALKSCNASQTNGRIVADLSKGQLKVIIKDLER
QIIAFYMDLFEQDQEKVAAHLGISKMSLWRKYNQMDR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgtcacataaaacgttaccgaatctggccttaataaccccctatccggcactggcagcc
gtggtgactgagcagtgcgccggtatttttaactgccatgtttttcacggaagcctggaa
aaagccgcggggattgcgcgaaatctcgaccctgatttttatgacatcattatcagccgt
ggcggtacggcggactatatcgatcgcgtaaccaaaattccggtagtacgtattctcacg
tccgcgctggatttgcttaaatcgctcacgccactgaaaaaacatccgcataaaatcgcc
tttttcaattatcagaactatttatctgacgtaaatctggtagcaaccgcgctggacgtg
gaaatcgaagaatttatcttcctgtcgcacgccgatatggtcgataaactcaaaaaatgc
cgtgcacgaaatttccagacggtggcaggaggattaccggtttcagacacggcggaacac
tatgagatgcacgggattctgatcgaaaatggtctggaatcggtgaacagcgcgctgcgc
gaagcgatggcaatcgtggagacgacccgccgcaagcaacaggatatggcgcgactggag
atcattctctcctcaattacggaagggatcatcgtcaccaacgaaaataacgagatccag
atcttcaataaatccgccgagaacatatttggcctgatggcctcgcaggtgattggcaaa
ccggtggatacggtcattaaaaatacgcggattaaccaggtattgctgacaaaatccccc
gagatccgggagattatggatctggacaatacctccatcattaccagccgggtgccaata
tttcgtggtacgcagtgtattggggtggtgtgttcgtttaccgatacgccgcaaatccaa
aaagtggagcggattattcgcggcaagctgatgaaaaaaggcttcaccgcccgttaccgt
tttgagcatatcctcacgcaaaataaacacatggagtcggtcattcatctggcaaaaatt
tatgccaatacccactccccggtgatgatttatggggaatccggcaccggtaaagagcta
ttcgcgcagagtattcataaccagagtaaacgccaccggggtccatttgtcgccattaac
tgcgccgccattccggaaaccctgctggaaagcgaactgtttggctatgaagggggctct
tttaccggcgcgcggcgcgaaggaaaagaaggtctgatagaactggcgcaccagggaacc
ttatttctcgatgaaattggtgaactgccactgcctattcagagccgcctgttacgcgtc
ttacaggaatacgaaattatgcgggtggggggaaaggatattatccctgtcgatgtgcgt
attatcggcgccactaaccgatcgctggaaaaaatggcggaggaaggctcgtttcgcggc
gatctctactaccggttgaacgtcttaccgctaatggtgccgccgctacgggaaagagac
ggcgacgtccgttttctggctgagcacttcctcgaaaaatcgggctgcgggcataaactg
gcgcagttcatcgccctgttttccacttacaactggccgggaaacgtgcgtgaactgaat
tttatcattgaacgactggcactattatcggccggatttccggacgcttcgctgtttgag
atattaaatctgaccggttttaacgcgcttaaatcctgcaacgcgtcacagacaaatggg
aggatcgtcgcggacctgagtaaaggacaactgaaagtcatcattaaagatctcgagcga
cagattattgcgttctacatggatctttttgaacaggatcaagagaaagtcgccgcccat
ctggggatcagcaaaatgagtttatggcgaaaatataatcagatggaccgctaa
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