Citrobacter sp. CFNIH10: C2U53_17620
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Entry
C2U53_17620 CDS
T05324
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
cir
Citrobacter sp. CFNIH10
Pathway
cir03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cir00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C2U53_17620
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cir03019
]
C2U53_17620
Enzymes [BR:
cir01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
C2U53_17620
Messenger RNA biogenesis [BR:
cir03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C2U53_17620
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
HI1480
UvrD-helicase
P-loop_SecA
Utp25_C
DUF6482
Motif
Other DBs
NCBI-ProteinID:
AUZ65502
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All DBs
Position
2956199..2957560
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AA seq
453 aa
AA seq
DB search
MSFDSLGLNPDILRAIAEQGYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLL
QHLITKQPHGKGRRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINPQMM
KLRGGVDVLVATPGRLLDLEHQNAVKLDQIEILVLDEADRMLDMGFIHDIRRVLAKLPAK
RQNLLFSATFSDEIKALAEKLLHNPLEIEVARRNTASEQVTQHVHFVDKKRKRELLSQMI
GQGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSGDIRVLV
ATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRAAATGEALSLVCVDEHKLLRDI
EKLLKKEIPRITTPGYEPDPSIKAEPIQNGRQQRSGGGGRGRGQGQGQGAGRAQQPRRQD
GGASKGKPRSAEGKPAGEKPRPPRRPRRITPVQ
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtcttttgattccctgggtttaaatcctgatattctgcgcgccattgccgagcagggt
taccgtgaacctacccctattcagcaacaggcgatccctgccgtgctggaaggtcgcgac
ctgatggcgagtgcgcagaccggtaccggtaaaacggcgggctttacgctgccgctgtta
cagcaccttattaccaaacagccgcatggcaaagggcgtcgcccggtgcgtgcgctgatc
ctgacgccaacgcgtgagctggcggcgcagattggtgaaaacgtccgtgattacagcaag
tatctgaacattcgctcgctggtggtttttggcggcgtgagtattaacccgcagatgatg
aaactgcgtggtggcgtcgatgtgttggtggcaacgccgggccgcttgctggacctggaa
caccagaacgcggtgaagctggaccagattgagattctggtgctggatgaagcggaccgt
atgctggatatgggctttattcacgatattcgccgcgtgttagcgaaactgccggcgaag
cgtcagaacctgctgttttccgcgacgttctctgatgagatcaaagcgctggccgaaaag
ctgttgcataacccactggaaattgaagtggcgcgtcgcaacacggcgtctgagcaggtg
acgcagcacgtccattttgtcgataagaaacgcaagcgcgaactgttgtcgcagatgatc
ggtcagggcaactggcagcaggtactggtctttacccgcaccaaacacggcgccaatcac
ctggcggaacagctcaacaaagatggtatccgcagcgcagcgatccacggtaacaagagc
cagggggcgcgtacccgtgcgttggcggatttcaaatcaggcgatatccgcgtgctggtg
gcgactgacattgcggcgcgtggtctggacatcgaagaactgccgcacgtggtgaactac
gagctgccgaacgttccggaagattatgtgcatcgtatcggtcgtaccggtcgtgctgcg
gcgacgggggaagcgctgtcgctggtttgtgttgatgaacacaaactgctgcgtgacatt
gaaaaactgctgaaaaaagagatcccgcgtattaccacgccgggctatgagccagatccc
tcgatcaaagctgagccgatccagaatggtcgtcagcagcgtagcggtggtggcggtcgg
ggccgtggtcagggacaagggcagggcgcgggtcgcgctcagcagccgcgtcgtcaggac
ggtggcgcgtcgaagggcaaaccccgtagcgcagaaggcaaaccggctggcgaaaagccg
cgtccgccgcgccgtccgcgcagaattacacccgtacagtaa
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