Cellulomonas iranensis: LFM56_04700
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Entry
LFM56_04700 CDS
T07886
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LFM56_04700
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cira03021
]
LFM56_04700
03400 DNA repair and recombination proteins [BR:
cira03400
]
LFM56_04700
Enzymes [BR:
cira01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LFM56_04700
Transcription machinery [BR:
cira03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LFM56_04700
DNA repair and recombination proteins [BR:
cira03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LFM56_04700
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
TraF_2
Cluap1
Motif
Other DBs
NCBI-ProteinID:
UCN15622
LinkDB
All DBs
Position
1057619..1061488
Genome browser
AA seq
1289 aa
AA seq
DB search
MLDVNVFDELRIGLATADDIRAWSHGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRSKVRRERMGHIELAAPVTHIWFFKGVPSRLGYLLDL
APKDLEKVIYFAAYMITWVDVDGRQEDLPNLQNEIDLEKKEIADRRDNDINARAQKLEAD
LAELEAEGAKADARRKVRDSAEREMAQLRKRADAELDRLEQVWDRFKNLKVADLEGDEML
YRALQDRYGNYFEGSMGAAAIQKRLEAFDLVAEAESLRETIRSGKGQRKTRALKRLKVVN
AFLTTNNSPTGMVLDAVPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDL
GAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSISDMLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKQMALELFKPFVMKRLVDLNHAQNIKSAKRMVERAR
PVVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPQLVEGKAIHLHPLVCAAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILKPSDGRPVTMPSQDMIIGLFHLTSDKEDPLGAGR
SFSSVSEAIMAFDQGSLDLNAVVKIRFDDLVLDEETAPEGWEPGQTLLFETTLGRALFNE
LLPVDYPYENGVVDKKRLSAIVNDLAERYPKVEVAASLDALKEAGFRWATRSGVTIAISD
VATPAIKQEILEEHEARAAKVQGQYDKGLITDDERRQELIEIWTNATDKVAKAMQANFPA
RNTVFRMVGSGARGNWMQVRQIAGMRGLVANPKGEIIPRPIKANYREGLSVLEYFIATHG
ARKGLADTALRTADSGYLTRRLVDVSQDVIVREEDCGTERGLTMPIGVAAADGTLRRHDK
VETSVYTRTLATDVSVGDEVVGRAGDDVGDVLLDRLLEAGVTELKIRSVLTCESRVGTCA
KCYGRSLATGKLVDIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVASADDITQGLPRVQEL
FEARTPKGEAPIAEFSGRVTIEEGDRSRAIVLTPDDGSEEIRYPITKRSRLLVGDGDHVS
VGTQLVQGAVDPKKVLRILGPRATQKHLVDEVQEVYRSQGVDIHDKHIEVIVRQMLRRVT
VLDSGETGLLPGELAERGRFEDANRKAVSEGGQPASGRPELMGITKASLATDSWLSAASF
QETTKVLTEAAMSSRSDPLLGLKENVILGKLIPAGTGLPRYRDIAVEATEEAKAELYPAF
GYDEIDFPALGLGTGEAIPLEDIDFGDYR
NT seq
3870 nt
NT seq
+upstream
nt +downstream
nt
ttgctcgacgtcaacgtcttcgacgagctgcgcatcggcctggccacggccgacgacatc
cgtgcctggtcgcacggtgaggtgaagaagcccgagaccatcaactaccggaccctgaag
ccggagaaggacgggctcttctgcgagaagatcttcggtcccacccgggactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggcgtc
gaggtgacgcgctcgaaggtgcgccgtgagcgcatgggccacatcgagctggccgccccc
gtcacgcacatctggttcttcaagggtgtgccgtcgcgtctgggctacctgctcgacctg
gcgccgaaggacctcgagaaggtcatctacttcgcggcctacatgatcacgtgggtcgac
gtggacggtcgccaggaggacctcccgaacctccagaacgagatcgacctggagaagaag
gagatcgcggaccgccgcgacaacgacatcaacgcccgcgcccagaagctcgaggccgac
ctggccgagctcgaggccgagggcgccaaggccgacgcacgccgcaaggtgcgcgactcg
gccgagcgcgagatggcgcagctgcgcaagcgtgccgacgccgagctcgaccgcctcgag
caggtctgggaccgcttcaagaacctcaaggtcgcggacctcgagggcgacgagatgctg
taccgcgccctgcaggaccggtacggcaactacttcgagggctcgatgggcgccgcggcg
atccagaagcgcctcgaggcgttcgacctggtcgccgaggccgagtcgctgcgcgagacc
atccgcagcggcaagggccagcgcaagacccgcgccctcaagcgcctcaaggtcgtcaac
gcgttcctcacgacgaacaactcgccgacgggcatggtcctggacgcggtcccggtcatc
ccgccggacctgcgcccgatggtccagctcgacggcggccgcttcgccacgtcggacctc
aacgacctgtaccgccgcgtcatcaaccggaacaaccgcctcaagcggctcctggacctg
ggcgcgccggagatcatcgtcaacaacgagaagcggatgctccaggaggccgtggactcg
ctgttcgacaacggccgccgcggtcgcccggtgacgggccccggcaaccgtccgctcaag
tcgatctccgacatgctcaagggcaagcagggccggttccgccagaacctgctcggcaag
cgcgtcgactactcgggccgttcggtcatcgtcgtcggcccgcagctcaagctgcaccag
tgcggcctgcccaagcagatggcgctcgagctgttcaagccgttcgtgatgaagcgcctg
gtggacctcaaccacgcgcagaacatcaagtcggccaagcgcatggtcgagcgcgcccgc
cccgtggtgtgggacgtgctcgaggaggtcatcaccgagcacccggtgctgctgaaccgt
gcgcccacgctgcaccgactgggcatccaggcgttcgagccgcagctcgtcgagggcaag
gcgatccacctgcacccgctcgtctgcgccgcgttcaacgcggacttcgacggtgaccag
atggccgtccacctgcccctgagcgccgaggcgcaggccgaggcccgcatcctcatgctc
tcgagcaacaacatcctcaagccgtcggacggccgaccggtgaccatgccctcgcaggac
atgatcatcggcctgttccacctcacctccgacaaggaggacccgctgggtgcgggccgc
tccttcagctcggtgtccgaggcgatcatggcgttcgaccaggggagcctcgacctcaac
gcggtcgtgaagatccggttcgacgacctcgtcctcgacgaggagaccgcccccgagggc
tgggagccgggtcagacgctgctgttcgagacgacgctcggccgtgcactcttcaacgag
ctgctgccggtcgactacccgtacgagaacggcgtggtcgacaagaagcgcctctcggcg
atcgtcaacgacctggccgagcggtacccgaaggtcgaggtcgcggcgtcgctggacgcg
ctgaaggaggccggcttccgctgggccacccgctcgggcgtgaccatcgcgatctccgac
gtcgccaccccggcgatcaagcaggagatcctcgaggagcacgaggcgcgcgcggcgaag
gtgcagggccagtacgacaagggcctcatcaccgacgacgagcgtcgtcaggagctcatc
gagatctggacgaacgccaccgacaaggtcgcgaaggcgatgcaggccaacttcccggcc
cgcaacaccgtcttccgcatggtcggctcgggtgcgcgaggcaactggatgcaggtccgc
cagatcgcgggcatgcgtggtctggtcgccaacccgaagggcgagatcatcccccgcccg
atcaaggcgaactaccgcgagggcctgtccgtcctcgagtacttcatcgcgacgcacggc
gcccgcaagggtctggcggacaccgctctgcggaccgccgactcgggctacctcacgcgt
cgtctggtggacgtctcgcaggacgtcatcgtccgcgaggaggactgcggcaccgagcgc
ggcctgaccatgccgatcggcgtggccgcggccgacgggacgctgcgtcggcacgacaag
gtcgagacgtccgtgtacacgcggacgctcgcgaccgacgtgtcggtcggtgacgaggtc
gtcggccgtgccggcgacgacgtcggcgacgtcctgctggaccggctgctcgaggcgggc
gtgaccgagctcaagatccgctcggtgctcacctgcgagtcgcgcgtcggcacgtgcgcc
aagtgctacggccggtcgctcgcgaccggcaagctcgtcgacatcggcgaggccgtcggc
atcatcgcggcccagtcgatcggtgagcccggcacgcagctcacgatgcgtaccttccac
accggtggtgtggcgtcggccgacgacatcacgcagggtctgccccgtgtccaggagctc
ttcgaggcccgtacccccaagggtgaggcgccgatcgcggagttctcgggccgcgtgacg
atcgaggagggcgaccgctcgcgggcgatcgtcctgacgccggacgacggctcggaggag
atccgctacccgatcaccaagcgctcgcgcctgctggtcggcgacggggaccacgtgtcg
gtgggcacgcagctcgtccagggtgcggtggacccgaagaaggtcctgcgcatcctcggc
ccgcgcgccacgcagaagcacctggtggacgaggtccaggaggtctaccgctcgcagggc
gtggacatccacgacaagcacatcgaggtcatcgtgcggcagatgctgcggcgcgtgacg
gtgctcgactccggcgagacgggtctgctgcccggcgagctggccgagcgcggccgcttc
gaggacgcgaaccgcaaggccgtgtccgagggtggccagcccgcgtcgggtcgtcccgag
ctcatgggcatcaccaaggcgtcgctcgcgacggactcgtggctgtcggccgcgtcgttc
caggagacgaccaaggtgctgaccgaggccgcgatgtcgagccgttcggacccgctgctg
ggcctgaaggagaacgtcatcctcggcaagctgatccccgccggcacgggtctgccccgc
taccgggacatcgcggtggaggcgaccgaggaggcgaaggccgagctgtacccggccttc
ggctacgacgagatcgacttcccggcgctcggcctgggcaccggcgaggcgatcccgctg
gaggacatcgacttcggcgactaccgctga
DBGET
integrated database retrieval system
