Cellulomonas iranensis: LFM56_06675
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Entry
LFM56_06675 CDS
T07886
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFM56_06675
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cira03019
]
LFM56_06675
03009 Ribosome biogenesis [BR:
cira03009
]
LFM56_06675
Enzymes [BR:
cira01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
LFM56_06675
Messenger RNA biogenesis [BR:
cira03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LFM56_06675
Ribosome biogenesis [BR:
cira03009
]
Prokaryotic type
rRNA processing factors
LFM56_06675
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
UCN15989
LinkDB
All DBs
Position
1488185..1491424
Genome browser
AA seq
1079 aa
AA seq
DB search
MSPANTPENTTDATEATQKAPAKRRRRVVRDVVTPPEASAAPPVADDAPATAAEAAATPA
EAPVVEPPVSEEPPVAVEAPEKPAARARRSRRVTRTVVLDDAAPAPVAPPAEPEPAAVEP
AADETDEDVPADEVVDPAPADEAEAPADEPEASGVAESVAEDAEERAPRRRRPSRRGGRS
ARTAKDADEATADAPQEDVPAAAEAVAPADRGALDVLAELGAVRPAGRAAQPASDGTAER
SAGRAAERGTDRTAEEAPARARLATTALLFQAPDPAVRPRRRRAQASTGSPEEISGAARS
DEETAVETVEEVVVDDAPVAEEAAPRARRRRGRGRKASADDASTDDATEDTQDETDDAAD
GAAEAADTADTADDESGDEDGGPRRRRRRGGRGRRGRAEQAGDDSAEDAPDAGDEDEDAE
QEPEQDAGDDESTGGSSRRRRRRRRGARAEGGDEPRRRSGGDEVTALRGSTRLEAKRQRR
REGRDAGRRRQIITEAEFLARRESVERSMVVRERDGRTQIAVLEDGVLVEHYVSHQAQAS
MVGNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEVNWDAAGLEGQPRRIEQALKSGDS
VLVQVTKDPIGHKGARLTSQVTLAGRYLVYVPGGGMTGISRKLPDTERSRLKKILRDVVP
DSAGVIVRTAAEGASEDELRADVVRLQGQWEAIERKTKTANAPALLQGEPDMAIRVVRDI
FNDDFSSLVVQGDDAWTTISTYVGELAPDLAARVEKWTGTQDLFSVHRIDEQLAKGMDRK
VWLPSGGSLVIDRTEAMTVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGG
IIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFS
ETCEHCHGRGFIVHTDPVSKSSRQDAGAQPAPEQGESKRSRRKRATAEQGSAAAPVAAAA
VPVLPEAREAVKATLATIAAAAAHAHDHDHERPEGADAPEQDGTDAAAQADAAPEAAPAP
AAPVLDVLAELGAARAAAAPVVETDAPLELHAVDPDLFASFEDDEPAQAGAAPADGEGD
NT seq
3240 nt
NT seq
+upstream
nt +downstream
nt
ttgtctcccgcgaacacccccgagaacaccaccgacgccaccgaggccacgcagaaggcg
cccgcgaagcgccgccggcgggtcgtgcgggacgtcgtgacaccccccgaggcgtccgcc
gcgccgcccgtcgccgacgacgcgccggccaccgccgctgaggcggcggcgacgcctgcc
gaggcccccgtcgtcgagccgcccgtctccgaggagccgccggtcgcggtcgaggcgccc
gagaagcccgccgcgcgcgcccggcgctcgcgccgcgtgacccgcaccgtcgtcctcgac
gacgccgcgcccgcgcccgtcgcgccgccggccgagcccgagccggccgcggtcgagccc
gcggcagacgagaccgacgaggacgtgccggcggacgaggtcgtcgaccccgcacccgcc
gacgaggccgaggcgcccgcggacgagcccgaggcctcgggtgtcgccgagtccgtggcc
gaggacgccgaggagcgcgcgccgcgccgtcgccgccccagccgtcgtggcggccggtcc
gcgcgcaccgcgaaggacgccgacgaggccaccgccgacgcgccgcaggaggacgtcccg
gccgccgccgaggccgtcgcccccgcggaccggggggcgctcgacgtgctcgccgagctc
ggtgcggtccgtcctgccggacgtgccgcgcagcccgcgtccgacggcacggccgagcgc
agcgccggacgggcagccgagcgtggcaccgaccgcaccgcggaggaggcgcccgcgcgc
gcccgcctcgcgaccaccgccctcctcttccaggcgcccgaccccgccgtccgcccccgg
cgtcggcgcgcgcaggcgtccaccggctcgcccgaggagatctcgggggccgcgcgcagc
gacgaggagaccgccgtcgagacggtcgaggaggtcgtcgtcgacgacgcgccggtcgcc
gaggaggccgcgccgcgcgcgcgccgtcgtcgcggccggggtcgcaaggcgtccgcggac
gacgcgagcaccgacgacgcgaccgaggacacgcaggacgagaccgacgacgcggccgac
ggcgccgccgaggctgccgacaccgcggacaccgccgacgacgagtccggcgacgaggac
ggcggcccgcgccgtcgtcgccggcggggcggccgcggccggcgcggccgtgccgagcag
gcgggcgacgacagcgccgaggacgcccccgacgcgggcgacgaggacgaggacgccgag
caggagcccgagcaggacgccggcgacgacgagtcgacgggcggctcgagccgtcgccgt
cgccgtcgccgccgtggcgcccgcgccgagggcggcgacgagccgcgccgccgctcgggc
ggcgacgaggtcaccgcgctgcgcgggtcgacgcgcctggaggccaagcgccagcgccgc
cgcgagggacgcgacgcgggccgccggcgccagatcatcaccgaggcggagttcctcgcg
cgccgcgagtcggtcgagcggtcgatggtcgtgcgcgagcgcgacggccgcacgcagatc
gcggtgctcgaggacggcgtgctcgtcgagcactacgtgtcgcaccaggcgcaggcctcg
atggtgggcaacgtctacctgggccgcgtccagaacgtgctgccgtccatggaggccgcg
ttcgtcgacgtcggcaagggccgcaacgccgtgctgtacgccggcgaggtcaactgggac
gcggccggcctcgaggggcagccgcgccgcatcgagcaggccctcaagtcgggcgactcg
gtgctcgtccaggtcaccaaggaccccatcgggcacaagggcgcgcgcctgaccagccag
gtcacgctggccggccgctacctcgtgtacgtgccgggcggcggcatgaccggcatcagc
cgcaagctccccgacaccgagcgctcgcgcctcaagaagatcctgcgcgacgtggtgccg
gactccgcgggcgtcatcgtgcgcaccgccgcggagggtgcgagcgaggacgagctgcgc
gccgacgtcgtgcgcctgcagggccagtgggaggcgatcgagcgcaagacgaagaccgcc
aacgcgcccgcgctgctgcagggcgagcccgacatggcgatccgcgtggtccgcgacatc
ttcaacgacgacttctcctcgctcgtggtccagggcgacgacgcgtggacgaccatctcg
acctacgtcggcgagctggcgcccgacctcgccgcccgcgtcgagaagtggaccggcacg
caggacctgttcagcgtgcaccgcatcgacgagcagctggccaagggcatggaccgcaag
gtctggctcccgtcgggcggctcgctcgtgatcgaccgcaccgaggccatgaccgtcgtc
gacgtcaacaccggcaagttcacgggcgccggcggcacgctcgaggagacggtgacgcgc
aacaacctcgaggcggccgaggagatcgtgcgccagctccggctgcgcgacatcggcggc
atcatcgtcatcgacttcatcgacatggtgctcgagtccaaccgcgacctcgtgctgcgt
cgcctcgtcgagtgcctggggcgcgaccgcaccaagcaccaggtcgccgaggtgacctcg
ctcggcctcgtgcagatgacgcgcaagcgggtcggccagggcctggtcgaggcgttcagc
gagacgtgcgagcactgccacggtcgcgggttcatcgtgcacaccgaccccgtgtcgaag
agctcgcgccaggacgcgggcgcgcagcccgcacccgagcagggcgagtcgaagcgctcg
cgccgcaagcgggccacggccgagcaggggagcgccgccgccccggtggcggccgcggcc
gtcccggtgctgcccgaggcgcgcgaggccgtgaaggcgaccctcgcgacgatcgcggcg
gccgccgcgcacgcgcacgaccacgaccacgagcggcccgagggtgcggacgccccggag
caggacggcacggacgcggcggcgcaggccgacgccgcgcccgaggccgccccggcaccg
gcggcgcccgtgctggacgtcctcgcggagctcggtgcggcgcgcgcggcggctgcgccg
gtcgtcgagaccgacgcgccgctcgagctgcacgcggtcgaccccgacctgttcgcgtcg
ttcgaggacgacgagcctgcgcaggccggggccgcgccggcggacggcgagggcgactga
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