Cellulomonas iranensis: LFM56_11965
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Entry
LFM56_11965 CDS
T07886
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
cira
Cellulomonas iranensis
Pathway
cira03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFM56_11965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cira03019
]
LFM56_11965
03400 DNA repair and recombination proteins [BR:
cira03400
]
LFM56_11965
Enzymes [BR:
cira01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LFM56_11965
Messenger RNA biogenesis [BR:
cira03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LFM56_11965
DNA repair and recombination proteins [BR:
cira03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LFM56_11965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF3553
ResIII
HTH_Crp_2
MarR_2
HTH_36
HTH_IclR
GntR
AAA_30
MarR
HTH_24
TrmB
ApbA
HTH_11
Motif
Other DBs
NCBI-ProteinID:
UCN13620
LinkDB
All DBs
Position
complement(2650263..2651870)
Genome browser
AA seq
535 aa
AA seq
DB search
MPHPLTLDDAVIRVLGEGARLRDAQRDALGGLPDHDTLLVARTGAGKTAVYAIATLLAGR
LTVVVSPLVALQRDQERALRESGLRVASVSSARTARQQRDALTAARDGAIDVLLLGPEQL
QRGVVADALAAADVGLVVVDEAHCVAEWGHDFRPDYLLVGRAVERLGAPRLLALTATAST
HVREEVVARLGMRDPRVVVHDADRPNIWLGARPAATEADRDAAVRDAVADEPGAVIVYGR
TRAQCERLAALLAQDRLAEVYHAGLRAAERAATQDRFLSGASDLVVATSAFGMGIDRPDV
RLVVHAGAPSTLDQYYQEVGRAGRDEEPARGLVVHRAEDETLARRQRGGAGPRPATLTRL
LDALPAPADDQAELARRSGLGRRTVARALATLQQAGAVEVADGELVAVPGTGVRALLRDV
RAERERRERLEASRVELVRTYTGTTDCRRRLLLELLGEEQRDPCGRCDSCDAGTALPAGG
SRVRPGQLVRHAEFGRGTVSVVEAERVTVLFEDRGYVTLDTEIALDAELLELRGA
NT seq
1608 nt
NT seq
+upstream
nt +downstream
nt
gtgccgcaccccctgacgctcgacgacgccgtgatccgcgtgctgggggagggagcccgg
ctgcgggacgcgcagcgcgacgctctcggcgggctgcccgaccacgacacgctcctggtc
gcccggaccggcgccggcaagaccgccgtctacgcgatcgcgacgctgctggcgggccgg
ctcacggtcgtcgtgtcgccgctcgtcgcgctgcagcgcgaccaggagcgtgcgctgcgg
gagtccgggctgcgggtcgcgtcggtcagttcggcgcgcaccgcgcggcagcagcgcgac
gcgctgacggccgcgcgcgacggcgctatcgacgtgctgctgctgggccccgagcagctg
cagcgcggcgtcgtggccgacgccctggcagccgccgacgtggggctcgtcgtggtcgac
gaggcgcactgcgtcgccgagtgggggcacgacttccggcccgactacctgctggtcggg
cgggccgtcgagcggctgggtgcgccgcggctgctcgcgctcacggcgaccgcgtcgacg
cacgtgcgcgaggaggtcgtcgcgcggctcggcatgcgcgacccgcgcgtcgtcgtgcac
gacgccgaccggcccaacatctggctgggcgcgcgcccggccgcgaccgaggcggaccgg
gacgccgcggtgcgcgacgccgtcgccgacgagccgggggccgtgatcgtctacgggcgc
acgcgcgcgcagtgcgagcggctcgccgcgctgctcgcgcaggaccgcctggccgaggtc
taccacgcgggcctgcgcgcggccgagcgtgccgcgacgcaggaccgattcctgtccggg
gcgagcgacctggtcgtcgcgacctcggcgttcggcatgggcatcgaccgccccgacgtg
cgcctcgtggtccacgccggcgcgccgtcgacgctcgaccagtactaccaggaggtgggg
cgggcggggcgcgacgaggagcccgcgcgggggctcgtggtgcaccgcgccgaggacgag
acgctcgcgcggcgccagcgcggcggcgcgggcccccggccggcgacgctcacgcgcctg
ctcgacgcgctgcccgcaccggccgacgaccaggccgagctcgcgcgccgcagcggcctc
ggccgacggaccgtcgcccgcgcgctcgcgacgctgcagcaggccggcgccgtcgaggtc
gccgacggcgagctcgtcgccgtgccggggacgggtgtgcgcgcgctgctgcgcgacgtg
cgcgccgagcgggagcgccgggagcgcctcgaggcgtcgcgcgtcgagctggtgcgcacg
tacacgggtacgaccgactgccggcggcggctgctgctcgagctgctcggcgaggagcag
cgcgacccctgcgggcgctgcgacagctgcgacgcgggcacggcgctgcccgcgggcggc
tcccgcgtgcggccggggcagctcgtgcggcacgcggagttcgggcgcggcaccgtgagc
gtcgtcgaggccgagcgtgtcaccgtgctgttcgaggaccgcgggtacgtcacgctcgac
accgagatcgcgctcgacgccgagctgctggagctgcgcggcgcgtga
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