Cellulomonas iranensis: LFM56_12995
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Entry
LFM56_12995 CDS
T07886
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cira
Cellulomonas iranensis
Pathway
cira03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cira00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LFM56_12995 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cira03021
]
LFM56_12995 (rho)
03019 Messenger RNA biogenesis [BR:
cira03019
]
LFM56_12995 (rho)
Transcription machinery [BR:
cira03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
LFM56_12995 (rho)
Messenger RNA biogenesis [BR:
cira03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LFM56_12995 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
Spore_III_AA
NACHT
ResIII
Motif
Other DBs
NCBI-ProteinID:
UCN13809
LinkDB
All DBs
Position
complement(2894669..2896699)
Genome browser
AA seq
676 aa
AA seq
DB search
MTDTIDAAAGGSAAGSISAMKLPELQSLAAQLGVKGTSKMRKGDLVQAISAARSGERPQA
LEARTTRRARAVVEEPAQAPAERAAEAPAPVAQAQDDAPRASRSRTAPRAATGQDALAGL
EAALDARLAPHEERDDRAARAVDAVAAVTGERRSRRAGRGAGAPAAVEPEAPQDDEQGGE
RRSRDRQQAERRQDRAPDRAPDRAQGAGDRRQAEARDDERAQDDRRQGATRGAAPQGDAA
DDDERGGRRRRSRDRYRDRDRKRGRGRTGDLAGLDEVEVAEDDVLLPVAGILDVLDSYAF
VRTTGYLPGPNDVYVSLNQVKRHGLRRGDAITGAVRQPREGEQPAPGGRPSKFNALVRLD
TVNGLTPDEARQRSEFSKLTPLYPQERLRLETEPGRLTPRVIDIVAPIGKGQRGLIVAPP
KAGKTIIMQHIANAITANNPEVHLMVVLVDERPEEVTDMERTVKGEVIASTFDRPASDHT
VVAELAIERAKRLVELGQDVVVLLDSLTRLSRAYNLAAPASGRILSGGVDASALYPPKKF
FGAARNIENGGSLTILASALVETGSKMDEVIFEEFKGTGNMELRLSRGLADKRIFPAVDV
NASGTRREEVLMSGDELKIIYKLRRVLGALDQQQAIELLLGKLRETKSNVEFLLQVQKTT
PGTNGHGLEEGVGKVV
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
gtgacagacaccatcgacgccgccgcgggcggctcggccgcgggcagcatctccgccatg
aagctgcccgagctccagtcgctcgccgcgcagctcggcgtcaagggcacgagcaagatg
cgcaagggcgacctcgtgcaggcgatctccgccgcgcgctcgggcgagcgcccgcaggcg
ctcgaggcgcgcacgacgcgtcgcgcgcgggccgtcgtcgaggagcccgcgcaggctccc
gccgagcgtgcggccgaggcgcccgcgcccgtggcgcaggcccaggacgacgcgccccgc
gcgagccggtcgcgcaccgcgccgcgggccgcgacgggtcaggacgccctcgcgggcctc
gaggccgcgctcgacgcgcggctcgcgccgcacgaggagcgcgacgaccgtgccgcgcgc
gcggtcgacgccgtggccgccgtgaccggcgagcgccgctcgcgccgcgccggtcggggc
gcgggcgcgcccgcggccgtcgagcccgaggcgccgcaggacgacgagcagggtggcgag
cgccgctcgcgcgaccgccagcaggccgagcgccgtcaggaccgcgcgcccgaccgtgcc
cccgaccgcgcgcagggcgcgggcgaccgtcggcaggccgaggcccgcgacgacgagcgc
gcgcaggacgaccgccgccagggtgcgacgcgtggtgccgccccgcagggcgacgccgcg
gacgacgacgagcgcggcggccgccgtcgccgatcgcgcgaccgctaccgcgaccgggac
cgcaagcgcggccgcggtcgcacgggcgacctcgccggcctcgacgaggtcgaggtcgcc
gaggacgacgtgctgctgcccgtcgcgggcatcctcgacgtgctcgactcgtacgcgttc
gtgcgcaccaccggctacctcccgggcccgaacgacgtctacgtctcgctcaaccaggtc
aagcgccacggcctgcgccgcggcgacgcgatcacgggtgccgtgcggcagccgcgcgag
ggcgagcagcccgcgccgggcggccgtcccagcaagttcaacgcgctcgtgcggctcgac
accgtcaacggcctcacgcccgacgaggcgcgccagcgctccgagttctccaagctcacg
ccgctgtacccgcaggagcgcctgcgcctggagaccgagccggggcgtctcacgccgcgc
gtgatcgacatcgtcgcgccgatcggcaagggccagcgcggcctcatcgtcgcgccgccc
aaggccggcaagacgatcatcatgcagcacatcgcgaacgcgatcaccgcgaacaacccc
gaggtccacctcatggtcgtgctcgtcgacgagcgccccgaggaggtcaccgacatggag
cggacggtcaagggcgaggtcatcgcctcgaccttcgaccgccccgcgtcggaccacacg
gtcgtcgcggagctcgcgatcgagcgcgccaagcgcctggtcgagctgggccaggacgtc
gtggtgctgctcgactcgctgacccgcctgtcgcgcgcctacaacctcgcggcgcccgcg
tcgggccggatcctgtcgggcggcgtcgacgcctcggcgctgtacccgcccaagaagttc
ttcggcgcggcgcgcaacatcgagaacggcggctcgctcacgatcctcgcctcggcgctg
gtcgagacgggctcgaagatggacgaggtcatcttcgaggagttcaagggcaccgggaac
atggagctgcgcctgtcgcgcggcctcgcggacaagcgcatcttccccgcggtcgacgtc
aacgcgtcgggcacgcgccgcgaggaggtcctcatgagcggcgacgagctgaagatcatc
tacaagctgcgtcgcgtgctcggtgcgctcgaccagcagcaggcgatcgagctgctgctc
ggcaagctgcgcgagaccaagtcgaacgtcgagttcctgctgcaggtgcagaagacgacg
ccgggcaccaacggccacggcctcgaggagggcgtgggcaaggttgtctga
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