Citrus sinensis (Valencia orange): 102577972
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Entry
102577972 CDS
T02983
Name
(RefSeq) squalene synthase 2 isoform X1
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit00100
Steroid biosynthesis
cit00909
Sesquiterpenoid and triterpenoid biosynthesis
cit01100
Metabolic pathways
cit01110
Biosynthesis of secondary metabolites
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
102577972
09109 Metabolism of terpenoids and polyketides
00909 Sesquiterpenoid and triterpenoid biosynthesis
102577972
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
cit01006
]
102577972
Enzymes [BR:
cit01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
102577972
Prenyltransferases [BR:
cit01006
]
Terpene biosynthesis
Squalene/phytoene synthase
102577972
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
Motif
Other DBs
NCBI-GeneID:
102577972
NCBI-ProteinID:
XP_052287922
UniProt:
A0A6M6A6F5
LinkDB
All DBs
Position
8:join(6252125..6252319,6253361..6253403,6253830..6253919,6254517..6254592,6255334..6255403,6256027..6256170,6256271..6256375,6256547..6256693,6257321..6257396,6257776..6257864,6258391..6258482,6258567..6258612,6258687..6258755)
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AA seq
413 aa
AA seq
DB search
MGSLAAVLRHPDDLYPLLKLKMASRQAEKQIPSEPHWAFCYSMLHKVSRSFALVIQQLGT
DLRNAVCIFYLVLRALDTVEDDTSIPTDVKVPILIAFHRHVYDREWHFSCGTKEYKVLMD
QFHHVSTAFLELGKGYQDAIEDITKRMGAGMAKFICKEVESIDDYDEYCYYVAGLVGLGL
SKLFYASGTEDLAPDSLSNSMGLFLQKTNIIRDYLEDINEIPKCRMFWPREIWSKYVNKL
EDLKYEENSDKAVQCLNDMVTNALMHVEDCLKYMSVLRDHAIFRFCAIPQIMAIGTLALC
YNNIEVFRGVVKMRRGLTAKVIDRTNNMTDVYLAFYDFSNILKPKINKNDPNATKTLSRV
EAIQKACMDSGVLNKRKSYIIQSGLRYSSTMIVIFFIILAIIFSYLSSTRASK
NT seq
1242 nt
NT seq
+upstream
nt +downstream
nt
atggggagtttggcagcggtgttgaggcacccagatgatctttacccgttattgaagctg
aaaatggcatcgaggcaagctgaaaagcagatcccatctgagcctcactgggctttttgt
tactctatgcttcataaggtctccagaagtttcgctctcgttattcaacagctcggtact
gacctcagaaacgccgtttgcatattttatttggttcttcgagccctcgacactgttgag
gatgacaccagcatacctacagatgtcaaagtgcctattctgatagcttttcatcgtcat
gtttatgaccgtgaatggcatttttcttgtggtacaaaggaatacaaagtgctcatggat
caatttcatcacgtttcaactgcttttctggagcttggaaaaggttatcaggatgcaatt
gaagatataaccaaaagaatgggtgctgggatggcaaaattcatttgcaaagaggtagag
tcgatcgatgactatgatgaatattgttactatgtagcaggacttgttggattaggtctg
tccaagcttttctatgcctctgggacagaagatctggctccagatagtctttccaactcg
atgggtttatttcttcagaaaacaaatatcattcgagattatctggaagatattaatgag
ataccgaagtgtcgcatgttttggcctcgtgagatctggagtaaatatgttaataaactt
gaggacttaaaatatgaggaaaactctgacaaagcagtacagtgcttgaatgatatggtc
accaatgctctgatgcatgtggaagattgtttgaagtacatgtctgttttaagggatcat
gctatattccgattctgtgctatccctcagatcatggctattggaacactagcattatgc
tacaacaatattgaagtcttcagaggtgtagtcaaaatgaggcgtggactcaccgctaaa
gtcattgaccgaacaaacaacatgactgatgtctatcttgccttctatgatttttccaat
attctgaaacccaagattaacaagaatgatccaaatgcgacaaaaacattgagcagggtg
gaagcaatacagaaagcttgcatggactccggagtcctaaacaaaagaaaatcttacatt
attcaaagtgggctgcgatatagttcaaccatgattgtcatatttttcatcatactggcc
attattttctcgtacctctcttccacccgagcaagcaagtag
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