Citrus sinensis (Valencia orange): 102606622
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Entry
102606622 CDS
T02983
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-I isoform X1
KO
K14403
cleavage and polyadenylation specificity factor subunit 3 [EC:3.1.27.-]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102606622
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102606622
03019 Messenger RNA biogenesis [BR:
cit03019
]
102606622
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102606622
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102606622
U7-dependent histone pre-mRNA processing factors
102606622
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CPSF73-100_C
Beta-Casp
Lactamase_B_6
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Lactamase_B_2
Lactamase_B_3
Beta_lactamase3
Motif
Other DBs
NCBI-GeneID:
102606622
NCBI-ProteinID:
XP_006471216
LinkDB
All DBs
Position
5:complement(join(6479033..6480673,6481471..6481620,6481710..6481755,6482375..6482472,6482599..6482748))
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AA seq
694 aa
AA seq
DB search
MASVGQPPSLKRRDAPVSREGDQLIITPLGAGNEVGRSCVYMSYKGKTILFDCGIHPAYS
GMAALPYFDEIDPSAIDVLLITHFHLDHAASLPYFLEKTTFKGRVFMTHATKAIYKLLLT
DYVKVSKVSVEDMLFDEQDINRSMDKIEVLDFHQTVEVNGIKFWCYTAGHVLGAAMFMVD
IAGVRVLYTGDYSREEDRHLRAAELPQFSPDICIIESTYGVQLHQPRNIREKRFTDVIHS
TISQGGRVLIPAFALGRAQELLLILDEYWSNHPEFHNIPIYYASPLAKKCMAVYQTYILS
MNERIRNQFANSNPFKFKHISPLNSIDDFSDVGPSVVMASPGGLQSGLSRQLFDIWCSDK
KNACVIPGYVVEGTLAKTIISEPKEVTLMNGLTAPLNMQVHYISFSAHADYAQTSTFLKE
LMPPNIILVHGESHEMGRLKTKLMTELADCNTKIITPKNCQSVEMYFNSEKMAKTIGRLA
EKTPEVGETVSGILVKKGFTYQIMAPDDLHIFSQLSTANITQRITVPYSGAFGVIKYRLE
QIYESVESSTDEESGVPTLRVHDQVTLKQDSEKHISMHWTSDPISDMVSDSIVALVLNIN
REVPKVVVESEAIKSEEESGKKAEKVIHALLVSLFGDVKLGDNGKVVINVDGNVAHLDKQ
SGDVESENEGLKERVKTAFMRIQRAVKPIPLAAP
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggcttcagtggggcaaccgccgtcacttaaaagacgggatgcgccggtatcaagagaa
ggtgaccaacttataataacccctttaggagctggcaatgaagtggggagatcatgtgtg
tacatgtcctataaagggaaaactattttgtttgactgtgggattcatcccgcttactcg
ggcatggctgctttaccttactttgatgagattgatccttcagcaattgacgtccttctt
atcacgcactttcatttggatcatgctgcatccctaccttattttctggagaagaccaca
ttcaaaggcagggtattcatgacccatgctacaaaggctatttacaagttgcttttgact
gattatgtaaaagtgagcaaagtttcagttgaagatatgttgtttgatgaacaagatatt
aatcgctccatggataagattgaggttcttgatttccatcagacagtggaagtgaatggc
attaaattctggtgctacactgctggccatgtccttggtgctgccatgtttatggttgac
attgctggtgttcgagtactctacactggagattattctcgtgaagaggaccgacatctc
cgtgctgctgagcttcctcagttctctcctgacatatgtataatcgaatccacttatggt
gttcagcttcatcaaccacggaacattcgtgagaagcgcttcactgatgttattcactca
actatttcccaaggaggtcgtgttctaattccggcatttgcccttggccgagcccaggaa
ttgctactgatccttgatgagtactggtcgaaccatccggagttccataatattccaata
tattatgcttctccacttgccaaaaagtgcatggctgtttatcagacatacatcctttcc
atgaatgagagaatccgcaaccagtttgcaaactcgaatcccttcaaattcaagcacatt
tccccattaaatagcattgacgacttcagtgacgttggcccttcggtggtgatggcaagc
ccgggtgggcttcagagtggtttgtctagacaattatttgatatttggtgctctgataag
aaaaatgcttgtgtcataccaggttatgttgtcgaaggaacattggcaaaaaccataatt
agtgaaccaaaagaagtcacccttatgaatggtctcaccgctcctctcaacatgcaggtc
cattacatatctttctctgcacacgcagactatgctcagacgagtacatttttgaaagag
cttatgcctcctaacataattcttgttcatggagaatctcatgagatggggaggctcaaa
acaaagctaatgaccgaattagccgactgcaatacaaaaattatcaccccaaagaactgt
cagtctgttgaaatgtattttaactctgagaaaatggcaaaaacgattggaaggctggct
gagaaaacgccagaagttggcgaaactgtcagtggcatacttgtaaagaaaggtttcact
taccagataatggctcctgatgatcttcacatcttctcacagctatcaacagcaaatatt
actcagaggattactgtcccttactcaggggcctttggtgtgataaagtaccggcttgag
cagatatatgagagtgtggagtcttcgacagatgaggaatctggggttcctactctacga
gtgcacgatcaagtgactttgaagcaggactcagagaagcatatatcgatgcattggact
tcagatcctataagtgacatggtgtcagattctattgtagcattggttctaaacatcaat
cgggaggttcctaaggtagttgtggaatcagaggccataaaatctgaggaagaaagtggg
aagaaagcagaaaaggttattcatgcactgcttgtctcactctttggagatgtgaaatta
ggagataatggaaaggtggtaatcaacgttgatgggaatgtggcacaccttgataaacaa
agcggagatgtagagagcgaaaatgagggtctcaaggaaagagttaaaacagcatttatg
cgaattcaaagggcagtaaagcctatcccactcgctgcaccctag
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