KEGG   Citrus sinensis (Valencia orange): 102606944
Entry
102606944         CDS       T02983                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB1-1
  KO
K03141  transcription initiation factor TFIIH subunit 1
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03022  Basal transcription factors
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102606944
  09124 Replication and repair
   03420 Nucleotide excision repair
    102606944
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102606944
   03400 DNA repair and recombination proteins [BR:cit03400]
    102606944
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     102606944
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     102606944
SSDB
Motif
Pfam: BSD PH_TFIIH SHOCT Herpes_UL33
Other DBs
NCBI-GeneID: 102606944
NCBI-ProteinID: XP_006474796
LinkDB
Position
9:join(29210973..29211056,29211143..29211221,29211340..29211401,29211487..29211550,29211779..29211905,29212092..29212167,29212384..29212479,29212629..29212673,29213349..29213405,29213564..29213719,29213854..29213919,29214150..29214273,29214425..29214484,29214577..29214695,29214799..29214981,29215076..29215189,29215412..29215489,29215989..29216036,29216124..29216192,29216288..29216374)
AA seq 597 aa
MSGAAQVTKRAKYKISVKDPGTPGALRMNDQKLMFMPDNRNSGAKLVVEFKSIQGHKYTK
EGSNKPPLINLANAQGGSYIFEFDSYADLHVCRDFVSKVLEKSKETPNAALEKSAIKLPD
EQLSEEEMQLRIKLLQENSELQKLHRQFVGGNILTEAEFWAARKKLLDIDPSKKSKQRVG
FKSAMISDIRPATDGRTNKVTFSLTPEIILQIFAEKPAVHRAFLNFVPNKMTEMEFWTKY
CRAEYLSRTKNYHAVVAEAAEDEELAVFLKEDDILANEVRKKIRRVDPTLDMEADEGDDY
THLPDHGIFRDGTKESNELQSEHYRRTLLQDLNRHAAVVLEGRTIDVEREDSTRALAEAL
ARSKRGNEGADNNANEERLDRTPRVAEIEDLQAPHCLPLAPLSIKDAREYFDSQQANTLK
ASRDAQASMKCSLSKQEAYRSVRDAISEIKDMGLSDPIVNPEVALKVYSGLTHNISSIKY
HLGKNPRETVLDRLPSATKEKLLYHWMSIQELLKHFWSSYPITTPYLYSKVNRLKDALSN
IYPQLEEMKESLPADLRHQVSLLVRPMQQALDAAIQHYDADLQKRSAKSGEKPNGYI
NT seq 1794 nt   +upstreamnt  +downstreamnt
atgtcaggtgcggcgcaagtgacgaagagagccaagtacaaaatctctgtcaaagacccc
ggcactcccggcgctcttagaatgaatgatcagaaattgatgttcatgcccgataatcga
aactcgggcgctaagctagttgttgagtttaagtccattcaagggcataaatacactaag
gagggatcaaataagccgccgttgattaatttagccaatgctcagggtggaagctacatt
tttgagtttgacagttacgcggatctccatgtttgccgagattttgtgagcaaagtcctt
gagaagtctaaagaaactccaaatgctgctttggaaaaatctgctattaagttacctgat
gaacaacttagtgaagaagaaatgcagcttcggattaagctcttgcaagaaaatagcgag
ctgcagaaacttcatcggcaatttgttggtggtaatatcttgacagaagctgaattttgg
gctgcaagaaagaagctgctggatatagaccctagcaagaagtcaaaacagcgagttggt
tttaaaagtgccatgatttcagacatcagaccagcaactgatggccgaacaaacaaagta
acttttagtttgactccagagatcattttacagatttttgccgagaaaccagctgttcac
cgggcgtttttgaattttgttcccaataagatgacagaaatggaattctggaccaaatat
tgtagagcagaatacctcagccgtacgaaaaattatcatgctgtggtagcagaggctgct
gaggacgaggaacttgctgttttcctaaaggaagatgatatattggcaaatgaagttcgg
aagaagatcagacgtgttgatccaaccttagacatggaagctgatgaaggggacgattac
acccatcttcctgatcatgggatctttcgcgatggcaccaaggaatcaaatgaattgcag
tctgaacattaccgaaggactctgttgcaagaccttaacaggcatgctgctgttgttctt
gaaggcagaactatagatgtggagagagaagacagcacaagggcattggctgaggcactt
gctaggtcaaagcggggtaatgagggagctgataacaatgcaaatgaggagagattggat
agaaccccccgggtggcagaaattgaggatctccaggcaccacattgtctgcctctagcc
ccacttagcattaaggatgctcgggagtactttgattctcaacaagcgaacacactaaaa
gcttctagagatgcacaggcttccatgaaatgcagcttgagcaaacaggaagcatataga
tctgtgagggatgcaatttctgagattaaagacatgggattgagtgatcccatagttaat
cctgaagttgctttgaaggtatatagtgggttgacccacaatatctctagtatcaaatat
catcttgggaagaatccccgagagactgttctagacagattgcctagtgcaaccaaggag
aaactgctatatcattggatgtccattcaagaattactgaagcatttctggtcatcatat
ccaattactactccatacctttattctaaggtaaacagattgaaggatgccttgtcaaat
atttatccgcagctagaggaaatgaaggaatcgttgccagcagatctccgacatcaggtt
tccctccttgttcgtccgatgcaacaggctctagatgctgctattcaacattatgacgca
gacttgcaaaagagatcagcaaaaagtggagagaaaccaaatggatacatctag

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