KEGG   Citrus sinensis (Valencia orange): 102607120
Entry
102607120         CDS       T02983                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X1
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:5.6.2.6]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102607120
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102607120
   03012 Translation factors [BR:cit03012]
    102607120
Enzymes [BR:cit01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102607120
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     102607120
Translation factors [BR:cit03012]
 Eukaryotic type
  Initiation factors
   Initiation associated factors
    102607120
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C DEAD HA2_N dsrm AAA_22 nSTAND3 T2SSE ATPase AAA_19 AAA_16 ABC_tran AAA_23 PhoH Myosin_head
Other DBs
NCBI-GeneID: 102607120
NCBI-ProteinID: XP_006492041
LinkDB
Position
7:join(16348139..16348360,16348634..16348788,16348894..16348981,16349081..16349317,16349713..16349808,16350594..16350782,16350916..16351075,16351175..16351305,16351523..16351693,16352179..16352451,16352708..16352902,16353586..16353789,16354920..16354989,16355122..16355270,16356020..16356325,16356419..16356478,16357294..16357446,16357542..16357652,16358241..16358711)
AA seq 1146 aa
MHRSYKLAGFLLRSIRSVSSKHSLRPSDTHRARNDPVFSLQVLLPLAPKRRGFCGYAAEQ
FSDDEYECDFEGHKASSTVANINEWKWKLGMLLRSETDQEVTSWDKRDRRDYEQISFLAK
RMGLYSQVYGKAVVVSKFPLPNYRPDLDDRRPQREVVIPLSLQRRVEGLLQEHLDRTQLS
SGKISEKSEESKPIDLAENVNMKENTDSFLDGSVMEKVLQRRSLQMRNMQRAWQESPEGN
KMLDFRKSLPSFKEKERLLQAIARNQVIVISGETGCGKTTQLPQYILESEIESGRGAFCN
IICTQPRRISAMAVSERVSAERGEPLGETVGYKVRLEGMKGKNTHLLFCTSGILLRRLLS
DHNLNGVTHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLILMSATLNAELFSNYFGGA
PTIHIPGFTYPVQAHFLEDVLEMTGYKLTSLNQVDDYGQEKLWKTQRQLLPRKRKNQITA
LVEDALHKSNFENYSSRARDSLASWTADCIGFNLIEAVLCHICRKECPGAVLVFMTGWED
ISCLRDQLKSHPLLGDPNRVLLLTCHGSMPTSEQKFIFEKAPPNIRKIVLATNMAEASIT
INDIVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGRVQPGQCYHLYPRCV
YEAFAEYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVQNAVDFLKRIGA
LDEKENLTNLGKFLSMLPVDPKLGKMLVMGAIFRCFDPVLTIVSGLSVRDPFLLPQEKKN
LAEIAKSRFSAKDYSDHMALVRAYEGWKDAEREGSGYEYCWRNFLSAQTLQAIHSLRKQF
TFILRDAGLLDEDGGNNKLSHNQSLVRAVICSGLYPGITSVVHRETSMSFKTMDDGQVFL
YANSVNARYQTIPYPWLVFGEKIKVNAVFIRDSTGISDSILILFGGALSSGVQAGHLKML
QGYIDFFMDPSLAECFLKFKEELDKLIQKKLDNPSLDILKEGKYLMLAVQELVSGDLCEG
RFVFGRQSKKSKESTDNCRFTKDGTNPKSLLQTLLMRARHSPPKYKTKHLKTNEFRALVE
FKGMQFVGKPKKNKQLAERDAAVEALAWLTHTSNTNQDEEGDSPPDVTDNMLKLLGKRRK
SKRHSG
NT seq 3441 nt   +upstreamnt  +downstreamnt
atgcacagaagttacaagctagcgggatttcttctgcggtcaatacgctcagtctccagc
aaacattcgttacgcccttccgatactcatagagctcgaaatgacccagttttcagcctt
caagtgctgcttcctcttgcaccaaaacgacgtggtttttgcgggtatgctgctgagcaa
ttctccgatgatgagtacgagtgcgactttgaaggccataaggcatcatcgacagtggcc
aacatcaatgaatggaagtggaaacttggcatgctattacgaagcgaaaccgatcaggaa
gtcacatcttgggataaaagagatagaagagactatgagcagatctcatttcttgctaaa
aggatgggactttatagtcaagtttacggaaaagcagtggttgtaagcaagtttcctctt
cccaactacaggcctgatttggatgataggcggccacaaagggaggttgttatcccccta
agcttgcagaggagagtagagggtctactgcaggaacacctggatagaactcagttaagt
tctggaaagatcagtgagaagtcagaagaatctaagcctattgatctggctgaaaatgtg
aatatgaaggagaatacagattctttccttgatggttctgtaatggagaaagttcttcag
aggaggagtttgcaaatgcgtaatatgcaaagggcttggcaggaatcacctgaaggcaat
aagatgttggacttccggaaatctcttccttcattcaaggaaaaggaaaggctgctccaa
gccatagctcggaatcaggttatagtgatatctggggaaacaggatgtggtaagaccact
caacttccgcaatacatattagagtcagaaatagaatctggtcgtggagcattttgtaac
ataatatgcacacaacctcgaagaatatctgctatggctgtttcagagagagtgtctgca
gagcgaggggagcctcttggtgaaacagttggctacaaagttcgattagagggtatgaaa
ggaaaaaatacccatctgctcttttgtaccagtggtattttacttcgacgtctgctaagt
gaccacaacttgaatggtgttacccatgtgtttgttgatgaaattcatgagcgaggcatg
aatgaagattttctgttgattgtcttgaaggatcttcttccacgtcgtcgggatttgagg
ttgattttaatgagtgccactctgaatgctgagctgttctccaattattttggcggagct
cccacgattcacattccgggcttcacatatccagttcaagcacactttctggaagatgta
ttggaaatgactggatataagttgacttctttaaaccaagttgatgactatggacaagag
aaattgtggaagacacagaggcagctgttgccacggaaaaggaaaaaccagatcactgct
cttgttgaggatgctcttcataaatctaattttgaaaattatagttccagagcacgtgat
tctctagcaagttggacagccgattgcataggatttaatcttattgaggcagttctatgc
cacatatgtcgaaaagagtgtccaggtgctgtgttagtatttatgactggttgggaggat
atcagctgtctgagggatcaacttaagtctcatccccttttgggagatcctaatcgagtt
ctgcttttaacttgtcatggttcaatgcctacatctgaacagaaattcatttttgagaaa
gcacctcctaatattcgcaaaattgttctggcaacaaatatggcagaggcaagtattaca
attaatgacatagtcttcgtggttgattgtgggaaagcgaaggagaccacttatgatgca
ttgaataacactccctgtctgctaccttcttggatatcacaggcatctgctcgacaaaga
aggggcagggctggccgagtccagcctggacaatgttaccacctataccccagatgtgtt
tatgaagcctttgctgaatatcaacttcctgaacttttgagaactcccttgaactctctc
tgcttgcaaataaagagtttgcaagttggaagcataggagaattcttgtcagcagctttg
cagccaccagaaccattggctgtccaaaatgctgtcgacttcttaaagaggattggtgca
ttggatgagaaggagaatctgacaaatcttggaaaatttttgtcgatgctgccagtagat
cccaagctagggaaaatgctagtcatgggtgctatatttcgttgctttgatccagtttta
acaatagtatctgggcttagtgttagagatcctttccttttgcctcaagaaaaaaagaat
ttggctgaaatagctaagtctagattctcagcaaaggactacagtgatcatatggctctt
gtccgtgcatatgaaggatggaaagatgctgaaagagaaggatcaggatatgagtattgc
tggaggaatttcctatctgcacaaactcttcaagccattcattctcttcgaaagcagttt
acattcattttacgagatgctggcctactagatgaagatggtggcaacaataaattaagt
cacaaccagtcactggtccgggcagtcatatgttctggcctgtatcctggcataacatct
gttgtgcatagagagacgtccatgtccttcaaaacaatggatgatggtcaagtttttcta
tatgcaaattctgtgaatgcacgttaccagacaattccttacccatggctggtctttggc
gaaaaaataaaggtcaatgcagttttcatacgtgattccactggaatatctgattccata
ctaatccttttcggtggggctctaagctctggggtacaggctggccacttgaaaatgctg
caaggttacattgattttttcatggatcctagcttggcagaatgctttttaaagtttaag
gaggaacttgataagcttattcagaaaaagcttgacaatcctagccttgacattcttaag
gaaggcaagtaccttatgcttgccgttcaagagcttgtatcaggagatttatgtgaggga
agatttgtttttggtcgtcaaagcaagaagtctaaggagtctactgataactgtagattt
acgaaagatggaacaaatcctaaaagcttgctacaaactctgttgatgagagcaaggcat
tcgcctccaaaatacaaaactaagcaccttaagacaaatgagttcagagcacttgtagaa
ttcaagggaatgcaatttgtaggcaaaccaaagaaaaacaagcagttagcagaaagggat
gctgctgttgaggcgttggcctggttaacgcacacttctaataccaatcaagatgaagaa
ggtgactcaccaccagacgtcactgataatatgctaaagcttctcgggaaacgtaggaaa
tctaaacgtcactctgggtaa

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