Citrus sinensis (Valencia orange): 102607318
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Entry
102607318 CDS
T02983
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102607318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102607318
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
102607318
mRNA cycle factors
Common to processing body (P body) and stress granule
102607318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
DUF5611
Motif
Other DBs
NCBI-GeneID:
102607318
NCBI-ProteinID:
XP_006470548
LinkDB
All DBs
Position
2:complement(join(4168852..4170769,4170935..4171164,4172358..4172480,4172610..4173215,4173346..4173423))
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AA seq
984 aa
AA seq
DB search
MMIVQMDNMSAPAPSARERAQRLYEKNIELENKRRRSVQARIPSDPNAWQQMRENYEAII
LEDHAFSEQHNVEYALWQLHYRRIEELRAHYSAAVSSAGSNTSQATKVPSRSDRVTKIRQ
QFKTFLSEATGFYHELILKIRAKYGLPLGNFSEDSENRIIMDKDGKKSSEVKKGLVSCHR
CLIYLGDLARYKGLYGEGDSKSREYAAASSYYLQAASLWPSSGNPHHQLAILASYSSDEL
VAVYRYFRSLAVDSPFSTARDNLIVAFEKNRQSYSQMSGDVKSSTAKEAGRLTGKGRGKV
EAKLASKDADMETSTVKESVSGVQEKLKAFCTRFVRLNGILFTRTSLETFAEVLALVSSG
LCELLSSGPEEELNFGSDANENALFIVRLVSILIFTVHNLKKENENQTYAEIVQRAVLLQ
NAFTAVFELMGHIIERCMQLSDPSSSYLLPGVLVFVEWLACYPDIASGSDADERQATVRS
NFWNQCISFLNKILSLGPMSVADDEDLTCFFNMSRYDEAETENRLALWEDIELRGFLPLL
PAQTILDFSRKISFGGDGNKERKDRVKRIFAAGKALANVIMVDQKPVCFDSKVKKFVIGT
EPLDDITFTSSDVSKTNDLILENQAEKAMNLGVVQAPQLYMDGEEEDEVIVFKPAVTEKR
ADVVGSTWMSYDGFTPGHNAAVGDLQFYAGSVSTSQDNLRQQSTYDSSLPLTVSVGNILP
QHLQSVQPHAPKQLMEEEVSLANSLKGLRLPENGRVLKHEMLENIGPSLPAARTIPIQQS
VNVNASGTHYSFSNGPEAVIPSKVDAIASLGVAADSSAVKASSAFPAGPRKSPVSRPVRH
LGPPPGFSPVPSKQVTAPISGSELTNENPLMDDYSWLDGYQLPPSTKGPGLGSSINYLSH
ANPPYVSNSNGLAGTGFPFPGKQFPAVQSHAEKQKGWQEYQSVEHLKLQHEQQLRQQQLI
NGNQFTPLPEQYQGQSIWTGRYFV
NT seq
2955 nt
NT seq
+upstream
nt +downstream
nt
atgatgattgtgcagatggataatatgtctgctcctgctccttcagcaagggagcgtgca
caacgcctctatgaaaagaatattgagttggaaaataagcgcaggaggtcagtccaggcg
cgaattccatcagatcccaatgcttggcaacagatgcgtgaaaattatgaggcgataatc
cttgaagatcatgccttctctgagcagcacaatgttgaatatgccttatggcagttacat
tacaggcgaatcgaagaattgagggcacactatagtgctgctgtttcttctgcaggctcg
aacacatcgcaggctacaaaagtaccttcgcgttctgatcgagttacaaaaattagacag
cagtttaaaacattcctttctgaagcaactggattttatcatgaattgatcttgaagatc
agagcaaaatatgggcttcctttggggaatttctctgaggattctgagaatcgtatcatc
atggacaaagatgggaagaaatcttctgaggtgaagaaaggtttggtttcttgtcaccga
tgtttgatatatttgggggacctagcaaggtacaaaggtttatatggggagggcgactct
aaatctcgagagtatgcagcagcttcaagttactatctgcaagctgcttctctttggcca
tcaagtgggaatccccaccaccagcttgctatattggcttcttattctagtgatgagttg
gtagctgtttatcggtactttcgaagtttggcagtggatagccccttttcaactgcaagg
gataacttgattgttgcatttgaaaagaaccgtcagagttactctcagatgtctggagat
gttaaatcttctactgccaaggaggctgggcggttgactggtaaaggaagagggaaagtc
gaagcaaaacttgcatcaaaagatgctgacatggagaccagcactgtgaaggaaagtgtg
tctggtgtccaggagaagcttaaagctttttgcactcgctttgtccgtttaaatggaatt
ctttttacacgcactagtctggagacatttgcagaagttcttgctttggttagcagtgga
ttgtgtgagcttctttcttctgggccagaagaggaactgaactttggatcagatgccaac
gagaatgctctttttatagttaggcttgtttccattcttatattcacagttcataatttg
aagaaggaaaatgaaaatcagacttacgcagaaattgtacagcgtgctgtacttcttcag
aatgcattcactgctgtatttgagttgatggggcatataatagagagatgtatgcagctg
agtgatccttcttcaagttacctgttacctggtgttttggtttttgtagaatggttggcc
tgctatcctgatattgcttctggcagtgatgcagacgagaggcaggcaactgttaggtca
aacttttggaaccagtgcatatccttccttaataagatcttgtcccttggcccaatgtcc
gttgctgatgatgaagacttgacttgctttttcaatatgagcagatatgatgaagcagaa
actgaaaatcgactagcattgtgggaggatattgagttaagagggtttttgccactcctt
cctgcacagactatcttagatttctctaggaagatctcttttggaggtgatggtaataag
gaaaggaaagatcgtgtcaaaaggattttcgcagctgggaaggctttggcaaatgtaatt
atggttgaccaaaaaccagtgtgttttgattcaaaggtgaagaaatttgttattggtact
gagccattggatgacatcacctttacctcctcagacgtgtccaaaacaaatgatttaatt
ctagaaaatcaagctgagaaagcgatgaatttgggggttgtgcaggcgccacaactgtac
atggatggggaggaggaggatgaggtcattgtttttaagccagcagttactgagaagaga
gctgatgtggttggttcgacgtggatgtcctatgatggctttacccccggccataatgct
gctgtaggtgatctacaattttatgctggttctgtttcaacatctcaagacaaccttcgc
cagcagtctacttatgattctagtttaccgctaactgtatcagttggcaatattctgcct
caacatctgcagtcagttcagccgcatgctccaaagcagcttatggaagaagaagtgtct
cttgctaatagcttgaaaggtttgaggctcccagagaatgggcgtgtgctgaaacatgag
atgttggaaaacataggcccttcactccctgcagcaaggacaattcccatccaacaatct
gttaatgtcaatgcaagtggtacgcactatagtttttcaaatgggccagaagctgttata
ccatccaaggttgatgccattgcatcattgggagttgctgctgacagttctgctgtgaag
gcctcgtcagctttccccgcaggccccagaaaaagtccagttagccgacctgtcaggcat
ctgggacctccacctggcttcagcccagttccttctaagcaagtaactgcacccatttct
ggttctgagttgactaacgagaatccattaatggatgattacagttggttggatggatat
cagttgccgccttcaacaaaagggcctggacttggtagttccatcaattatttatcacat
gcaaaccctccgtatgtcagtaacagcaatggcttggctgggacaggctttccatttcct
ggaaagcagtttccagcagtgcagtcccatgctgaaaaacagaaggggtggcaggagtac
cagagtgttgagcatttaaaattacagcacgaacaacagctgaggcaacagcaactcata
aatggaaaccagtttactccactgcctgagcaatatcaaggacagtctatctggaccggt
cgttatttcgtgtga
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