Citrus sinensis (Valencia orange): 102607596
Help
Entry
102607596 CDS
T02983
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
102607596
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cit04121
]
102607596
03036 Chromosome and associated proteins [BR:
cit03036
]
102607596
Ubiquitin system [BR:
cit04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
102607596
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
102607596
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WDR55
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_EML_2
Beta-prop_WDR41
ANAPC4_WD40
Beta-prop_Aladin
MIOS_WD40
Beta-prop_WDR90_POC16_2nd
WD40_RFWD3
EIF3I
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
102607596
NCBI-ProteinID:
NP_001306987
UniProt:
A0A067G915
LinkDB
All DBs
Position
1:complement(22789920..22790933)
Genome browser
AA seq
337 aa
AA seq
DB search
MENSSQESHLRSENSVTHESPYPLYAMAVCGQRIAVGSFIEDYTNRVDVVSFEPESLSIK
THPSLSFDHPYPPTKLMFDPNSSSRKSSSNRHLLASSGDFLRLWDVGDSSIEPVAVLNNS
KSSEFCAPLTSFDWNEIEPKRIGTCSIDTTCTIWDIEKGVVETQLIAHDKEVYDICWGEA
RVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLRYMATILMDSNKVV
ILDIRSPTLPVAELERHRACVNAIAWAPQSRRHICSVGDDSQAFIWELPLPPVAGPNGID
PMSMYSAGSEINQLQWSPAQPDWLAIAFSNKMQLLKV
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggaaaactcaagccaagaatcccacctcagatccgagaactcggtgacccatgaatct
ccttaccctctctacgccatggctgtgtgcggccaacgcatcgccatcggaagcttcatt
gaagactacaccaatcgagtcgacgtcgtttcattcgagccagaatctctctctatcaag
acccatccctctctctcctttgaccacccttacccacccaccaagctaatgtttgatccc
aactcttcatcacgcaaatcctcctccaaccgtcatctgctcgcttcatccggcgacttt
cttcgcctttgggacgttggcgattcatcgatcgagcccgttgccgtgctcaacaacagc
aagagcagtgagttttgcgctcctttgacttcatttgattggaacgagattgaacccaag
agaattggaacttgtagcatcgacactacttgcactatctgggatattgaaaagggtgtt
gttgaaactcaacttattgctcatgacaaagaggtttacgacatctgctggggtgaagct
agggtttttgcttcagtttctgctgatgggtcagtgagaattttcgatttgagagacaaa
gaacattccacgattatttacgagagcccgcaacccgacaccccattgcttagattagct
tggaataagcaggatttaaggtacatggcaactatattgatggacagtaataaagttgtc
attttggatatcaggtcgccaacattgccggttgctgaattggagaggcatagagcttgt
gtcaatgccattgcgtgggctcctcagagtcgtaggcatatatgttctgttggagatgat
tcgcaggctttcatttgggaattgccattgccaccagtggctggacctaatggtattgat
cctatgtccatgtactctgctggctctgaaattaaccaactccaatggtctcctgcacag
cctgattggcttgcaattgctttctctaacaaaatgcaacttttgaaagtttga
DBGET
integrated database retrieval system
