Citrus sinensis (Valencia orange): 102608157
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Entry
102608157 CDS
T02983
Name
(RefSeq) nuclear pore complex protein NUP88
KO
K14318
nuclear pore complex protein Nup88
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102608157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102608157
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
102608157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup88
Cluap1
Ezh2_MCSS
Occludin_ELL
MscS_porin
Motif
Other DBs
NCBI-GeneID:
102608157
NCBI-ProteinID:
XP_006486326
LinkDB
All DBs
Position
4:complement(join(1109951..1110213,1110303..1110552,1111126..1112049,1112186..1112402,1112853..1112914,1113265..1113409,1113748..1113870,1113968..1114122,1114221..1114508))
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AA seq
808 aa
AA seq
DB search
MRFNFDLSEQSTDSRLSLTPKEEVEWVPLQKHPVFSAPDAVRNGGGKFNGAPKNLVAWDG
ASRLYYWDQNAQCLHRISVRLGEPEPTSILAASPSKVMRADVKLNFEVSRISINRNGSAL
LLIGSDGLCVMYLYGRTCSSDNKTIICRTVSVGSQIYFSSSNVIRTLQVSWHPYSDTHLG
ILSSDSVFRLFNLASDVMQPEQEYYLQPVEPGRYRNAASICPVDFSFGGDHLWDRFSVFV
LFSDGSIYILCPVVPFGSVYKWESILEIYNDAQTFGLRSVNSLAVRNSSLAISWLEATFP
EVAQETIDEGDLPALKAHPHALFDSSVSLQGPLRKICHGGEDESLAVRGAECEGRAVSFL
YNLVSKDSIVVTSWSGGQLQIDALADEIQPVWTVNIPPRLRVDSQDRIHGLAMICEPISG
ELPVVKLDQPLDHTVWLGHPPPLLRLATVDLALPKNTESGSIITMSIDPLMQERIYIVHD
GGIDSVVLHFLPFTSQTRGKDETNRSPSVHPVLNTCQGETSSPSPLCGFVSLSDSFGYSW
IVGVTSTQECVVIEMKTWNLLLPVQIDSEKKSVDLGAKKEIDTPDIISKELLSGPKVILL
PQASPNLRSVAADSIEGRSTLHQYFNLFQENYVEYAHKVHFELKHHAPQLKRIIDDQHAR
LSEAQNKVLKVEERQSRLEERIDHAVQQHNSLEQRLQHLRNLPGAHKKPLSGAEHALKAE
LDHFEGVELDALHSSIEALRARLRRLTQSPEGSPGNQQRQTLGKNYVQDAQISQLRSLME
KLSLVNSENLKKVKLVESALKKQESSRY
NT seq
2427 nt
NT seq
+upstream
nt +downstream
nt
atgcgtttcaatttcgacttgtcggagcagagcacagactcacgcctatccctcacgccg
aaagaagaagtcgagtgggtcccgcttcaaaagcacccagtgttctccgcccccgacgca
gttagaaacggcggcggaaaatttaacggagctccaaagaatctagtggcctgggacgga
gcctcacggttgtattactgggaccagaacgcacaatgcctccatcgaatctccgttcgg
ttgggcgaacccgaaccgacttccatcctcgccgcttctccctccaaggtgatgcgagct
gatgtgaagctgaattttgaagttagtagaatctcgatcaatagaaacggatcagctttg
ttacttattggctcagatggtctctgtgtaatgtacttgtacggacgtacttgtagtagt
gataacaaaaccatcatttgcaggactgtttcagtcggttcccaaatatattttagtagc
agcaatgtgatacggacactacaagtttcgtggcatccttatagtgatacccatctgggg
attctttcttctgattcagttttcagacttttcaacctggcttcagatgtaatgcaacca
gagcaagaatattatctgcagccagttgaaccaggtcgatataggaatgctgcttcaatt
tgccctgttgatttttcttttgggggagaccacttgtgggacagattcagtgtttttgta
ctattcagtgatggttcaatttacatcctatgtccagtagtcccatttggaagtgtttac
aaatgggaatcgatattggagatatataatgatgctcaaacatttggtttgagatcagtc
aattcattggctgtcagaaattctagtcttgcaatctcttggctggaagcaacatttcct
gaggtggctcaagaaacaattgatgaaggagatctacctgcactaaaagctcatccgcat
gctttgtttgattcatcagtttctttgcaggggcctctaagaaagatatgtcatggtggg
gaagatgaatctctagctgttcgaggtgcagaatgtgaaggtcgtgcagtcagctttctc
tataatttggtcagcaaagactcaattgtggtgacttcatggagtggtgggcaattgcag
atagatgctctagctgatgaaatccagccagtctggacagttaatatcccgcctcgtctt
cgtgttgattcccaggatcgtattcatggtcttgctatgatctgtgaaccaatctcaggt
gagcttccagttgtgaagcttgatcaaccacttgatcatactgtttggttgggacatcca
cctcccttgttgagactggctaccgtggacttggccttgcccaaaaacacagaaagtggt
tctattattaccatgtctattgatcccctaatgcaagaaagaatatatattgtccatgat
ggagggatcgattcagtagtgttgcattttctcccgtttacaagtcaaaccaggggtaag
gatgaaactaacagaagtccctctgtgcatcccgtcctaaatacatgccagggagaaacc
tcctcaccatctcccttgtgtgggtttgtatcattatcggattcatttgggtactcatgg
atagtgggagtcacctccactcaagagtgtgttgtgatagagatgaagacttggaaccta
ttgcttcctgttcaaattgattcagagaaaaaatctgttgatttgggagcaaagaaagag
atagatactcctgatatcataagcaaagaactgttaagtggtccaaaggtgattcttctt
cctcaggcttcaccgaatctacgttctgttgctgctgattctattgaaggtcgatcaact
cttcatcagtatttcaatcttttccaagagaattatgttgagtatgcacataaggtacac
tttgagctcaagcatcatgctccacaactgaagcgaatcattgatgatcaacatgctcgt
ttatctgaggcacaaaataaggttttgaaagttgaggagagacaatcgagattggaggag
aggatcgatcatgcagttcagcagcataacagtttggaacaacgattacaacacttgcgg
aatttgcctggggcacacaagaaacctttgtctggagctgagcatgcattgaaggctgag
cttgaccactttgaaggagttgagttggatgctttgcattcttccattgaagcattaaga
gcgaggctaagaaggttgacgcaatctccagaaggcagtcctgggaaccaacaaaggcaa
acattagggaagaactatgtccaagatgcccaaatatcgcagctcagatccttaatggaa
aagctctcacttgtaaatagcgagaacttgaagaaggttaagcttgttgaatctgcatta
aaaaagcaagaaagcagcagatactga
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