KEGG   Citrus sinensis (Valencia orange): 102608212
Entry
102608212         CDS       T02983                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A-like isoform X1
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03030  DNA replication
cit03410  Base excision repair
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102608212
   03410 Base excision repair
    102608212
   03420 Nucleotide excision repair
    102608212
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cit03032]
    102608212
   03400 DNA repair and recombination proteins [BR:cit03400]
    102608212
Enzymes [BR:cit01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     102608212
DNA replication proteins [BR:cit03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    102608212
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      102608212
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 DNA_pol_B zf-DPOE zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2
Other DBs
NCBI-GeneID: 102608212
NCBI-ProteinID: XP_006471371
LinkDB
Position
8:complement(join(25252150..25252510,25253223..25253329,25253993..25254196,25254298..25254468,25254663..25254773,25254933..25254999,25255079..25255239,25255527..25255575,25255656..25255915,25256064..25256123,25256329..25256403,25256618..25256701,25256790..25256891,25256993..25257125,25257714..25257778,25257873..25258053,25258802..25258992,25259231..25259305,25259420..25259617,25259700..25259847,25259936..25260393,25260482..25260624,25260703..25260757,25262242..25262442,25262644..25262739,25262841..25262984,25263061..25263141,25263299..25263386,25263578..25263754,25263867..25263946,25264040..25264145,25264667..25264761,25264830..25264971,25265069..25265187,25265424..25265528,25265997..25266110,25267633..25267809,25267890..25268054,25269067..25269150,25269489..25269611,25270394..25270528,25270623..25270709,25271398..25271615,25271723..25271811,25271982..25272142,25272614..25272709,25272807..25272866,25272983..25273048,25273398..25273550))
AA seq 2206 aa
MDRRRWDRQDGRRTKKQKLIRSAEEELEAKLGYDLFSEGDKRLGWLLTFASSSLEDEDTR
KVYSCIDLYFVSQDGSTFKSKYKFRPYFYAATKEKMEMDVEAYLRRRYESQIADIEILEK
EDLDLKNHLSGLHKSYLKISFDTVQQLMDVKKDLLQVVERNQAKFDAAEAYESILTGKRE
QRPQDFLDCIVDLREYDVPYHIRFAIDNDVRCGQWYDVSVSSTGPLLEKRVDLLQRAEVH
VCAFDIETTKLPLKFPDADYDIIMMISYMLDGQGYLIINRECVGEDIEDLEYTPKPEFEG
YFKVTNVNNEIELLRLWFAHMQEVKPGIYVTYNGDYFDWPFLETRAAHHGFKMSEELGFQ
CDKNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAK
EKPQMMASYSVSDAVATYYLYMTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQA
YKANVICPNKHQSDPEKFYRNHLLESETYIGGHVECLESGVFRSDLPTSFKLDPSAYEQL
LNNLDRDLQYAIKVEGKMDLESVSNYDEVKNAIMEKLLRLQEEPIREECPLIYHLDVAAM
YPNIILTNRLQPPSIVTDEVCTACDFNRPGKTCLRKLEWVWRGEIFMGKRSDYYHLKKQI
ESEFVDGTNGHLSKSFLDLPKMEQQSRLKDRLKKYCQKAYKRVLDKPVTELREAGICMRE
NSFYVDTVRSFRDRRYEYKGLNKVWKGKLSEAKASGNSIKIQEAQDMVVLYDSLQLAHKC
ILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLIEKIGKPLELDTDGIWCVLPG
SFPENFTFKTKDLKKKLTISYPCVMLNVDVARNNTNDQYQTLVDPVSKTYETHSECSIEF
EVDGPYKAMILPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFD
KFLHGSTIEECYSAVAAVANRWLDLLDNQGKDIADSELIDYISESSTMSKSLADYGEQKS
CAVTTARRLSDFLGDTMVKDKGLRCQYIVACEPQGTPVSERAVPVAIFETDAEIMKFYLR
KWCKTSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVSNPVPRVVHPDWLYKKVRE
KEDKFRQRKLVDIFSSLKKDDFLNKTCNAETNLMDENVEDLEDFPKKRRNSVNGPRPIVR
CFEVNNEQKTVKTTDQVDSLRQQLEPSEVSDQQPSSQNAIDTENIDRIVDYKGWLELKKR
KWKDNLDRRKKQKLGSLRASHQANGVSESLGDMINHKEAQRRTGVGSYFRRQETAMTRCH
WQIIQLVPSSQSGVFLAWVVVEGIMVRIPITVPRLFYLNSKDPIVEKFPGRRVNKTLPHG
RRSFNLIEVMIDEDQFRKESKKLAALLADPEVEGIYETKVPPEFNAILQIGCVCKVDKST
KKRNTQDGWNLSELHMKTTAECPYLEQSVSFFYLYHSISDVRAIYIGYFPTSRTVTVVVV
SPHQHRELSPSILEKQFREACRTLSTELPPGVRITFKVEYVGYVKDAEKILQRAISEYRH
EHYGPTVAVIECPNSHSLRLGLRVLNDFPCVSIPPNARDSKYQVLGWQQNAAKIGMQRCA
ASSQWFNERISLARYAHVPLGNFEPDWLMFTADVFFSRALHDQQQILWISDDGVPDLGGT
SEEDECFADEVHQPVLTYPGAYRKVSVELKIHHLSVNALLKSNQVNEMEGGGLFGFDQDM
NSGPYNNELCGFDETTSSAPAFRVLKQLIQRCLTDAVTSGNVFADAILQHLYRWLCSPHS
KLHDPVLHRILHKVMQKVFAMLLAEFRKLGAAIIFANFSKVIIDTGKFDLSAAKAYCDSL
LKALQTRELFEWIELEPVHFWHSLLFMDQYNYGGIPARADESLDDDSQVDIVSSWNIAEY
LPKEIQDHFVLVVSEFMYIPWKHAQKLAASRASLQEGSSCTPSITVAAAENFESHIVQYV
KGEISSYFTGKLLSIVRDAIHHMKKMNNDQHNSPGVMQTAANIHKVDAPLEFIKHVCAAF
ALDQNVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCPSFILPNVICSYCNDCRDLDLCRD
MALLAQDWHCAMPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCIRCNQVKAAHLAEQ
CACAGSFRCKEDASDFRSKMQIFLNIANRQGFQLLQECTSWILEVQ
NT seq 6621 nt   +upstreamnt  +downstreamnt
atggacaggcgaagatgggatcgtcaagacgggagacgcacgaagaagcagaagctaata
cgcagcgccgaagaggagctagaggcgaagcttggttatgatctattctccgaaggcgac
aaacgacttggctggcttctcactttcgcttcgtcttctttggaggatgaagacacccgc
aaagtgtatagttgcattgatctttattttgtttctcaggatggttcaactttcaagtca
aagtacaagttccgtccttatttttatgcagccacaaaggaaaaaatggaaatggatgtt
gaggcatatctgaggagacgatatgaaagccagattgctgatattgaaatcttggagaaa
gaggaccttgatctgaaaaatcatttatctggtttgcacaaatcctacctaaaaatatct
tttgatactgttcaacaattaatggatgtcaagaaagatctattgcaagttgttgaaaga
aaccaggcaaagtttgatgctgcagaagcatatgagtccattttgacaggaaaacgagaa
caaagacctcaagactttttagattgcattgttgatctccgggagtatgacgttccttac
catatccgctttgccattgacaatgatgtgcgctgtgggcaatggtatgatgttagtgta
tctagtactggtcctctgcttgagaagagggttgatcttctgcaacgtgctgaagttcat
gtttgtgcttttgatattgagaccacaaagcttcctttgaaatttccggatgcagattat
gatataataatgatgatatcgtacatgcttgatggacaaggttacttgatcattaacaga
gagtgtgtgggggaggatatagaggatttagagtatactccgaaacctgaatttgaaggg
tatttcaaagtgacaaatgtgaacaatgagatagaacttcttagactgtggtttgcccac
atgcaagaggtgaagcccggtatttatgttacttataatggtgattactttgactggcca
ttcctggaaactagagcagcacatcatgggtttaaaatgagtgaagaactaggttttcaa
tgtgacaaaaaccagggtgaatgtcgtgcaaaatttgcttgtcatctggactgttttgca
tgggtcaaacgtgatagttatcttcctcaggggagccaaggcctcaaggctgttacaaag
gcaaagttgggttatgatcccttggaggtgaatccggaggatatggttcgctttgcaaag
gaaaaacctcagatgatggcctcctattctgtttctgatgctgtagcaacttattacttg
tatatgacctatgttcatcccttcattttctctcttgcaactataattcccatgtctcca
gatgaggttttgcgcaaaggtagtgggaccctttgtgaaatgcttcttatggtccaggca
tacaaggcaaatgtcatctgccctaacaaacatcaatctgatccagagaagttctacagg
aatcaccttcttgaaagtgaaacatatataggtggtcatgtggaatgccttgaaagtggt
gtttttagatcagatcttccgactagctttaagcttgatccatctgcctatgagcaatta
ctcaacaaccttgatcgagatttgcaatatgctataaaagtagagggtaagatggacctg
gaatcagtctccaactacgatgaagtgaagaatgctatcatggaaaagcttctgaggttg
caagaagaacctatacgtgaagaatgccccctcatttatcatctggatgtggctgcaatg
tacccaaacattattttgacgaaccggctccagccaccatcaatagttacagatgaggtc
tgcaccgcatgtgattttaaccgtccaggcaaaacttgtcttcgaaagcttgaatgggtt
tggcgcggagagatatttatgggaaaaagaagtgattattatcatctgaagaagcaaatt
gaatctgagtttgttgatggcaccaacggtcatttgtcaaaatccttccttgatctgcct
aagatggagcaacaatcaagactaaaagatcggctaaagaaatactgtcagaaggcatat
aagcgagtgcttgacaagcccgtaactgaacttcgagaagcagggatctgcatgcgtgaa
aactcgttttatgtggacactgttcgcagcttccgagatagaaggtatgaatacaaagga
ctaaataaggtttggaaggggaagttatcagaagcaaaggcaagcggaaattccattaag
atacaggaagcacaagatatggtagtgctatatgattccttacaacttgcccacaagtgt
atccttaattccttctatggatatgttatgcgcaagggtgctagatggtactctatggaa
atggctggtgtagttacgtatactggcgcaaaaatcattcaaaatgctcgcttgctcatt
gaaaagattggaaaacctcttgaactagatacagatgggatctggtgcgtgctccctgga
tcctttcctgagaactttaccttcaaaacaaaagacttgaagaagaagctgactatttca
tatccatgtgtaatgcttaatgttgatgttgcaagaaacaacacaaatgatcaatatcag
acacttgtagatcctgtcagtaaaacttatgaaactcatagtgaatgctcaattgaattt
gaagtggatggaccgtacaaggcaatgatccttcctgcttctaaggaagaggggattttg
attaagaagcgatatgctgtttttaatgatgatggaacccttgctgaactaaaaggtttt
gaaattaagcgcagaggtgagctgaagctcattaaagttttccaggctgaacttttcgat
aagtttctccacgggtcaaccatagaggagtgctactcagctgttgctgctgtggcaaat
cgttggcttgatcttcttgacaatcagggaaaggatattgcagatagtgagttgattgat
tacatatcagagtcgagcacaatgagcaaatccttggcagactatggtgaacagaagtcg
tgtgcagtgacaactgcaagacgtctctctgattttcttggtgatacaatggttaaagat
aaaggactgcgttgtcaatatatagttgcatgcgaaccacagggaacacctgtgagtgag
cgtgctgttcctgttgcaatatttgaaactgatgctgagataatgaagttttatttacgc
aagtggtgcaagacttcatcagatgttggtatccgatccattgttgactggtcctattat
aaacaacgccttagctcagcaattcaaaaaattattactattcctgctgctatgcaaaag
gtttcaaatcctgttcctagggtagttcaccctgattggctgtataaaaaggttcgtgag
aaggaagacaaatttcgtcaaaggaaattagttgatatattcagttctttgaagaaggat
gattttttaaacaagacttgtaatgctgaaaccaatttgatggatgagaatgttgaagat
ttggaagactttccaaaaaagagaagaaattctgtaaatggacctagaccaattgttcgt
tgttttgaagtcaataatgagcaaaagacagtcaagacaacggatcaagtagattctttg
cgacaacaacttgaacctagtgaagtttcggatcagcaaccttcatcacaaaatgccatt
gatactgaaaatattgacagaattgtagattataaaggttggcttgagttaaagaaacga
aaatggaaagacaatcttgatagaaggaagaagcaaaagttgggcagtctgagggcttca
caccaagctaatggtgtttctgagtcactgggtgacatgataaaccataaggaagctcag
agaagaactggtgtcggttcatattttagaagacaagaaacagccatgacccgctgccat
tggcagataatacagctagttccaagttcacagagtggtgtatttcttgcctgggtagtt
gttgaaggaatcatggttaggattcctataactgttccacgattgttttacctcaactct
aaagatcctatagtagaaaagtttcctggtaggcgtgtcaacaagacccttccccatgga
aggcgtagctttaacttaattgaggttatgattgatgaagatcaatttaggaaagaaagc
aagaaactcgctgctctcctcgcagaccctgaagtggaggggatatacgaaacgaaggtg
ccgccagagtttaacgctatccttcagattggttgcgtctgtaaagtggataaatcaact
aagaaacgaaatactcaggatggctggaacctgagtgagctgcatatgaagactacagca
gagtgtccttatctagagcaatcagtctctttcttttacctttatcatagcatttctgat
gtacgtgcaatatacattggatattttcctacatcaagaacagtaactgttgtggtggtt
agtccccatcagcatagggaattatcaccttctatccttgaaaaacaatttcgagaagct
tgtcggactttgtccactgaacttcctccaggcgttcgcattactttcaaggtggagtac
gtaggatatgtcaaggatgctgaaaagattctacaaagagctataagcgaatacagacat
gaacattatggacctacagttgctgttattgaatgcccaaactctcattcattgaggtta
ggtctacgtgttctcaatgattttccatgtgtaagcatccctcccaatgctcgtgacagt
aaatatcaggtacttgggtggcagcaaaatgctgcaaaaattggaatgcaacgttgtgct
gcatcatcacagtggttcaatgagagaatttccctagccagatatgctcatgtaccattg
ggaaatttcgaacctgactggcttatgtttacagcagatgtgttcttttctagagcatta
cacgatcagcaacagattctttggatatctgatgatggcgttccagatttaggaggcact
agtgaagaagatgaatgttttgctgatgaggtccatcaacctgttcttacatatcctgga
gcatatagaaaagtttctgtggagctgaagattcatcatctctctgtcaatgcacttctc
aaaagcaaccaagtgaatgaaatggaaggaggtggtttgtttggatttgaccaggatatg
aattctggaccttacaataacgaactttgtggctttgatgagactacctcatctgcacct
gcatttcgtgtcctgaaacaactcatccagaggtgcctaacggatgcagttacttctgga
aacgtatttgctgatgccatactgcaacatctatatcgttggctttgcagcccccattca
aaacttcatgatccagtacttcaccgcatacttcacaaggtcatgcaaaaggtgtttgca
atgttgttggctgagtttcgcaaattaggtgccgcaataatatttgcaaatttctcgaag
gtaattatagacacaggaaaattcgatctgtctgccgctaaagcttattgtgatagcttg
ctgaaagctctgcaaactagagaactgttcgagtggattgagcttgagccagtgcacttt
tggcattccttgctttttatggatcagtataactatggtggaatccctgctcgagctgac
gaaagtttagatgatgactcacaagtggatattgtttcaagttggaatattgctgaatac
ttgcccaaggaaattcaagatcattttgttttagttgtctccgagtttatgtatattcct
tggaagcatgcacaaaagctagcagcaagtagagcatctttgcaagagggcagctcatgc
actccttcaatcactgttgcagctgcagagaactttgagtcacacatagtgcaatatgtt
aaaggggagatcagctcttatttcactggaaaacttctaagtattgttcgtgatgctatt
catcatatgaagaaaatgaacaatgatcagcataactcacctggggttatgcaaactgct
gcaaacatccacaaagttgatgctccattggagttcattaagcatgtttgtgctgctttt
gctctcgaccaaaatgttcagcatgatgttctggtgatgagaaagaacctcttgaaatat
gttcgtgtaagggagtttgctccagaagctgagtttcgtgatccctgcccttcttttatc
ttaccgaacgtcatttgcagctactgcaatgactgtcgagacttggacttgtgccgtgac
atggctttactggctcaggattggcattgtgccatgccacagtgtggccagccttatgac
cgtgaggtgatggagaatgctcttcttcaaattgttcgtcagagagagcggctctaccat
ctacaggatctggtatgcattaggtgcaaccaggtgaaagctgctcatttagctgaacaa
tgtgcgtgtgctggttcatttaggtgcaaggaagacgcgtctgatttccgcagcaaaatg
cagattttcttaaacatagctaatcgacagggttttcaactcctccaggaatgtacctca
tggattttagaagttcagtag

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