KEGG   Citrus sinensis (Valencia orange): 102608810
Entry
102608810         CDS       T02983                                 
Name
(RefSeq) general transcription and DNA repair factor IIH subunit TFB2-like
  KO
K03144  transcription initiation factor TFIIH subunit 4
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03022  Basal transcription factors
cit03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    102608810
  09124 Replication and repair
   03420 Nucleotide excision repair
    102608810
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102608810
   03400 DNA repair and recombination proteins [BR:cit03400]
    102608810
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     102608810
DNA repair and recombination proteins [BR:cit03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     102608810
SSDB
Motif
Pfam: Tfb2 Tfb2_C Helicase_C_3 MetRS-N
Other DBs
NCBI-GeneID: 102608810
NCBI-ProteinID: XP_052292364
LinkDB
Position
1:complement(join(6317363..6317500,6317586..6317660,6317816..6317896,6319342..6319432,6319556..6319641,6319910..6319993,6320088..6320171,6320484..6320552,6321045..6321104,6321186..6321231,6321337..6321437,6321585..6321678,6321920..6321988,6322494..6322655,6323035..6323147))
AA seq 450 aa
MPQVKIIAKNFMDMVASLTARDLNKLYENPFICEAILRSLPPLAKKYVFQMLYIDGAIPA
KTMEEWVLPDGFTKHKVAIDRLVQLRLFSEEKKKETTYRLNSTFQSNLQKHLINGGALPR
EPMPSGITARLPTLEDLEAYAIGQWECFLLQLISSAQAERPTNFSSSMMKVFQRGLLIQR
DKEAPRLTESGFQFLLMDTNAQLWYIVREYISNSQERGINQADLISFLLELSFHVAGEAY
NLNTLSEIQRSMIKDFADLGLVKLQQGRKESWFIPTKLATNLSMSLTDSSARKEGFVVVE
TNFRMYAYSTSKLHCEILRLFSKIEYQLPNLIVGAITKESLYNAFENGITAEQIISFLQQ
NAHPRVADRIPSVPENVCDQIRLWESDLNRVEMTPAHYYEEFPSRDVFEAACDYARDRSG
LLWEDSKKMRLVVNAEIHMHMREFLRGQNK
NT seq 1353 nt   +upstreamnt  +downstreamnt
atgccgcaggtgaagatcatagcgaaaaatttcatggacatggtggcgtcactgactgcc
agagacctcaataagctctacgagaatcccttcatttgcgaagccattctcaggtcactg
ccaccactagcaaagaagtatgtattccaaatgttgtatattgatggtgcaataccggct
aagacgatggaggagtgggtgcttcccgatgggttcactaagcacaaagtagccatcgat
cggttggttcagttgagattattttcagaggaaaagaagaaggaaaccacttatagatta
aattcaacattccagtctaatctccagaagcatttaataaatggtggagctttgccaagg
gaaccaatgccttctggtattactgcaaggcttccaaccttggaggaccttgaggcctat
gccattggacaatgggagtgtttcttgctgcaacttattagttcagcccaagctgaaagg
ccgacaaatttcagctcttccatgatgaaggttttccagcgtggtcttttgattcaaagg
gataaagaagccccaaggttaacagagagtggttttcaatttttgctgatggatactaat
gcacagctctggtacatcgttagagaatatatctccaattcccaggaacgaggcataaat
caagcagatctgatttcttttcttctggagcttagtttccatgtcgctggggaggcatat
aatttaaatacactgagtgaaatacaaagaagtatgatcaaagactttgcagacttggga
ttggtcaaacttcagcagggcaggaaagaaagttggtttatacctactaaattagctacc
aatctttcaatgagcttaactgattcatcagcacggaaagaggggtttgttgtagtggaa
acaaacttcaggatgtatgcttattcaacatctaagctacactgtgaaattttgcgtctt
ttctcaaagatagagtatcaacttccaaaccttatagttggagcaataacgaaagaaagt
ttgtataatgcttttgagaatggcattacagctgagcagataattagttttcttcagcaa
aatgcacatcctcgggttgctgacagaataccatctgtaccagaaaatgtttgtgatcag
ataagattgtgggaatccgatttgaatagggttgaaatgacccctgcacattattatgag
gagtttccctcgagggatgtctttgaggctgcttgtgattatgcaagagatcgaagtggt
ttgctctgggaggattcaaagaaaatgcgtctagttgttaatgcagaaattcatatgcac
atgagagagttccttcggggtcaaaacaagtag

DBGET integrated database retrieval system