Citrus sinensis (Valencia orange): 102608815
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Entry
102608815 CDS
T02983
Name
(RefSeq) WD-40 repeat-containing protein MSI1
KO
K10752
histone-binding protein RBBP4
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03082
ATP-dependent chromatin remodeling
cit03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102608815
03083 Polycomb repressive complex
102608815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
cit03036
]
102608815
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
102608815
Histone modification proteins
HAT complexes
HATB complex
102608815
HDAC complexes
Sin3A-HDAC complex
102608815
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
102608815
PRC2.2
102608815
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
102608815
Heterochromatin formation proteins
Other heterochromatin formation proteins
102608815
Chromatin remodeling factors
NuRD complex
102608815
NuRF complex
102608815
NuRF complex (fruit fly)
102608815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
CAF1C_H4-bd
WD40_CDC20-Fz
WD40_Prp19
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_EML_2
WD40_WDHD1_1st
WDR55
EIF3I
WD40_RFWD3
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
WD_LRWD1
Beta-prop_RIG_1st
eIF2A
Beta-prop_HPS5
MIOS_WD40
Beta-prop_WDR19_1st
NBCH_WD40
WD40_MABP1-WDR62_1st
Motif
Other DBs
NCBI-GeneID:
102608815
NCBI-ProteinID:
XP_024954225
LinkDB
All DBs
Position
3:join(32270339..32270683,32271140..32271466,32271761..32271913,32272577..32272701,32272887..32272982,32273103..32273331)
Genome browser
AA seq
424 aa
AA seq
DB search
MGKDEEEMRGEIEERLINEEYKIWKKNTPFLYDLVITHALEWPSLTVEWLPDREEPPGKD
YSVQKMILGTHTSENEPNYLMLAQVQLPLDDSENDARHYDDDRSDFGGFGCANGKVQIIQ
QINHDGEVNRARYMPQNPFLIATKTVSAEVYVFDYSKHPSKPPLDGACSPDLRLRGHSTE
GYGLSWSKFKEGHLLSGSDDAQICLWDINAAPKNKSLEAMQIFKVHEGVVEDVAWHLRHE
YLFGSVGDDQYLLIWDLRTPSVSKPVQSVVAHQSEVNCLAFNPFNEWILATGSTDKTVKL
FDLRKISTALHTFDSHKEEVFQVGWNPKNETILASCCLGRRLMVWDLSRIDEEQTPEDAE
DGPPELLFIHGGHTSKISDFSWNPCEDWVISSVAEDNILQIWQMAENIYHDEDDLPGDES
AKAS
NT seq
1275 nt
NT seq
+upstream
nt +downstream
nt
atgggaaaagacgaggaagagatgaggggagagatagaagagaggttgataaatgaagaa
tacaagatttggaagaagaacactccgtttctgtatgatcttgtcatcacacatgccctt
gaatggccttctctgactgttgagtggttgcctgatagagaagaaccccctggcaaagac
tattctgttcagaaaatgatccttgggacacacacatctgagaatgagcccaactatctc
atgcttgctcaggtccagcttcctcttgatgactcagagaatgatgcccgccattacgat
gatgaccgctctgattttggtggctttggctgtgccaatggcaaggtgcaaataattcag
caaataaaccatgatggagaggttaaccgggcccgttatatgcctcagaatccatttctt
attgccacgaagactgttagtgctgaggtctatgtttttgattatagcaaacacccttct
aaacctcctctggatggtgcatgtagtcctgatctgaggctgaggggccatagcactgaa
ggatacggtttatcgtggagcaagttcaaggaaggtcatctgttaagtggttctgatgat
gctcaaatatgtttatgggacatcaatgcagctcctaagaataagtctcttgaggccatg
cagatttttaaggttcatgaaggtgttgtagaagatgtagcatggcatctgaggcatgaa
tacttgtttggttctgttggggatgatcaatacctgcttatatgggatctacggacacca
tcagtgagcaaaccagtccaatctgttgtcgctcaccagagtgaggttaactgcctagct
ttcaacccctttaatgaatggattttggcaacggggtctactgataagacagttaagtta
tttgatctacgcaagatcagcactgctctgcacacatttgacagtcacaaagaggaagtt
tttcaagttgggtggaacccaaagaatgagacaattttagcttcttgttgtcttggtaga
aggctgatggtttgggaccttagcaggattgacgaggaacagacaccggaggatgccgaa
gatggtccgccagagttgctctttattcatggtggtcatacgagtaaaatatcagatttc
tcatggaacccatgtgaagattgggttatttctagtgtagccgaagacaacattcttcaa
atctggcagatggcagagaacatttaccatgacgaagatgatttaccgggagatgaatcc
gctaaagcttcttaa
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