Citrus sinensis (Valencia orange): 102608898
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Entry
102608898 CDS
T02983
Name
(RefSeq) sm-like protein LSM1A
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102608898
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102608898
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102608898
mRNA degradation factors
5'-3' decay
Lsm complex
102608898
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
102608898
NCBI-ProteinID:
XP_006474709
LinkDB
All DBs
Position
9:join(29660790..29660850,29662043..29662111,29662205..29662320,29662417..29662479,29663298..29663375)
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AA seq
128 aa
AA seq
DB search
MSWAGPDDVFLSTSLATYLDKKILVLLRDGRKLLGLLRSFDQFANVVLEGACERIIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPAHMTRVSTAEIKRAQKAEKDATVLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtgggctggccctgatgatgtctttctctccacttctctcgccacctatctcgac
aaaaaaattctcgtcctgttgcgagatgggcggaagctcttgggtttgctccgttcattt
gatcaatttgctaatgttgttcttgaaggtgcttgtgagcgaatcattgtgggtgatctt
tactgtgatatccccttaggtctatacgtaatccgtggggagaatgttgtcttaattgga
gagctggatttagagaaggaggagctacctgcacatatgactcgtgtatcaacagctgag
ataaagagggctcagaaagcggaaaaggatgccacagttttgaagggttccatgagaaaa
agaatggagttccttgattttgattaa
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integrated database retrieval system
