KEGG   Citrus sinensis (Valencia orange): 102608920
Entry
102608920         CDS       T02983                                 
Name
(RefSeq) uncharacterized protein LOC102608920 isoform X1
  KO
K06100  symplekin
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102608920
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:cit03021]
    102608920
   03019 Messenger RNA biogenesis [BR:cit03019]
    102608920
Transcription machinery [BR:cit03021]
 Eukaryotic type
  RNA polymerase II system
   Other transcription-related factors
    Transcription termination factor
     102608920
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage stimulation factor (CSTF) complex
     102608920
    U7-dependent histone pre-mRNA processing factors
     102608920
SSDB
Motif
Pfam: Symplekin_C SYMPK_PTA1_N HEAT HEAT_2 HEAT_EZ CRM1_C
Other DBs
NCBI-GeneID: 102608920
NCBI-ProteinID: XP_006481042
LinkDB
Position
6:join(16743246..16743463,16743553..16743712,16744186..16744278,16744357..16744462,16744574..16744742,16744855..16745029,16745661..16745783,16745913..16746443,16746547..16747149,16747711..16747779,16748332..16748448,16748532..16748777,16749467..16749514,16749600..16749737,16750523..16750687,16750780..16750842,16750984..16751091,16751198..16751281,16751357..16751404,16751517..16751591,16751698..16751793,16751884..16751964,16752055..16752126,16752493..16752537,16752622..16752705,16753554..16753657,16753789..16753951)
AA seq 1327 aa
MVGMTNSNSREKYLSLVYSVKAAINLPSKLEYLRRLKQALLDEENALLISEIIPCFFDLF
SDSFAPVRKFATEVIGEVGLKHVQLVPEIVPVLISVLDDATPAVARQAITSGLDLFRFTL
EKVAIQGLHSSDLDSSLESSWEWMLKFKDKVYSIAFQPGGGGVRLLALKFVEAVILLYTP
DPNGSLKPPSDEENLVEFNISWLRGCHPLLNVGDLSIEASEKLGLLLDQLRSPTVKSLSS
LVVVVLINSLSAIARKRPPYYGRILPVLLGLDPPTSVIEGMHISGPQHALKNALLACLKC
THPGASPWRDRLVGALKEMEAGDLAENALKQFSKANGNVEEKDDMPAKEEKPSNRTCDAV
QSNLGRKRSGADDGCDLEGDDDVSGKRARPTPSDSEALSQDHRPSTGSTYNKGNSDSGPV
QQLVAMFGALVAQGEKAVSSLEILISSISADLLAEVVMANMCNLPPYLPQAEGDEESVLN
MSIVGSDTGAKYPASFVANVLSLSSSFPPVASLLDAHQPISSDIGKLQKEEELHAADGDD
GASVDDGISHVAGNAMLPPGSLANSDVLPVTENADSSVSAGLHAIGNIESDIPGLSSSGR
NDGFSETLVASSSATTDLEDASQEQVTSGRSPLDLPSVSTDRSDELSSKAAITDTQSLIS
STATSVSLPSHFVLPKMSAPVVELSDEQKDQLQKLSYIRIVEAYKQIAVAGGSQIRLSLL
ASLGVEFPSELEPWKLLQEHILSDYVNHEGHELTLRVLYRLFGEAEEEHDFFSSTTAASA
YEMFLLTVAETLRDSFPPTDKSLSRLLGEVPYLPKSVLKLLEGLCLLGSFDKGEKELQSG
DRVTQGLSAVWSLILLRPPLREDCLKIALLSAVHCSEEVRMKAIRLVANKLYPLSSIAQQ
IEDFAQERLLSTINGDGKVKKDAEVSTNGPQKDSDLEKPSNELMSGSTVSKDISSDIHQS
STSPSMSSLSIPEAQRCMSLYFALCTKKHSLFREIFILYKDASNVVKQAVQRHIPILVRT
IGSSSELLEIISDPPGGSESLLMQVLHTLTDGTIPSLELIFTIKKLYDSKLKDVEILFPI
LPFLPGDEILVIFPHLVSLPQDKFQAALARILQGSSNSGPVLSPAEVLIAIHGIDPDKDG
IPLKKVTDACNACFEQRQIFTQQVLAKVLNQLVEQIPLPLLFMRTVLQAIGAFPALVDFI
MEILSRLITKQIWKYPKLWVGFLKCAQLTQPQSFNVLLQLPPPQLENALNRISALKAPLV
AHASQPNIRSSLPRSVLAVLGIALDTQTSSQAQTSQAQTSQGQTGDISNSEKEAVTEKSK
EESSVAS
NT seq 3984 nt   +upstreamnt  +downstreamnt
atggtgggaatgacgaattcaaattcaagagaaaaatacttgagtctagtgtattcagtt
aaggcagccattaacttaccttcgaaactcgaatacttgcgtcggctaaagcaagctttg
cttgatgaagaaaacgctcttttaatttccgaaattatcccttgtttcttcgacctcttt
tccgattcgttcgctccggttcgcaaatttgccaccgaggttattggtgaagttggattg
aagcacgtgcaacttgtaccagaaattgtgcctgttttaatcagtgttttagatgatgct
acgcctgcagttgctcggcaagctataacttctggacttgatttgtttcgattcactctt
gaaaaagttgctatccagggtttacattccagtgatttggacagttcacttgagtcatcc
tgggaatggatgttgaagttcaaggataaagtatactcaatagcttttcagccaggaggt
ggtggggtaagattgctagctctgaagtttgtagaagcagttattcttctgtacacacct
gatcctaatggctcactaaagcccccttctgatgaagaaaatcttgtagaatttaatata
tcttggcttcgtgggtgccatcctctacttaatgttggagatttgtcaatagaagccagc
gaaaagttgggattattgcttgatcagcttaggtctccaactgtgaaatctctcagtagc
ttagtggttgttgtgcttattaatagtctttcagcaatagcgaggaaaagacctccatat
tatggacgcattttgccagttttacttggtctggatcctccaacctctgtcatagaaggg
atgcatatttctggtccacaacatgctctaaaaaatgccctccttgcctgcttgaaatgt
acacatccgggtgcttcaccgtggagggatcggttagttggtgccctgaaagagatggaa
gctggagatttggcagagaatgccctaaaacaattttccaaagctaatggaaatgtagaa
gagaaagatgatatgccagctaaggaagagaagccctcgaatagaacatgtgatgctgtg
caaagtaacttgggaagaaagagatctggggcagatgatggttgtgacctggaaggagat
gatgatgtatctggaaaacgtgctagaccaacacctagtgactcagaagcactatctcaa
gatcatcgtccttcaactgggtcaacctataacaaaggaaacagtgattctggtcctgtg
cagcagcttgttgccatgtttggtgccttggttgctcaaggtgaaaaagctgtttcatct
ttggagatacttatttcaagtatctcagctgacttgctagccgaggtagtgatggccaat
atgtgtaaccttcccccctaccttcctcaagctgaaggagatgaagaatcagtgttgaac
atgagtatagttggcagtgacactggagccaagtatccagcatcgtttgtggctaatgtt
ctttcactttcaagtagcttcccaccagtagcttcacttctagacgcgcatcagccaatt
tccagtgatatagggaaactgcaaaaggaggaagagcttcatgctgcagatggggatgat
ggcgcttctgtagatgatggcataagtcatgtagctggaaatgcaatgctgcctcctggt
tcactggctaattctgatgttttgcctgtgacagagaatgctgattcatctgtttcagct
ggtctccatgctataggaaatatagagagtgatattcctggtctaagttcttctggtcgt
aatgatggattttccgaaaccttggttgcttcctcgtcagctactactgatttagaagat
gccagtcaagagcaagttacaagtggaaggtcacctctggatcttccgtcggtatcaaca
gataggtcagacgagcttagttcaaaagcagctattacagacacacagagccttatttcc
tcaacagcaacctctgttagtttgccttctcattttgtactgccaaagatgtcagcacct
gttgttgaactctctgatgaacagaaggatcaattacaaaaattatcttatattcgcatt
gttgaagcatataagcaaatagcagttgctgggggttcccaaatccgcttatctttactt
gcttctttaggtgtcgagttcccctcggagttagaaccatggaaattgttgcaggagcac
atcttgtctgattatgtgaatcatgagggacacgagttgacattgcgtgtgctctatagg
ttatttggcgaggcagaagaggaacatgacttcttttcttctacaactgctgcttctgca
tatgaaatgttccttcttactgtggctgaaacacttagagattcttttccacctacagat
aaatccctaagtagattgcttggtgaagttccttatttgccaaagtcagttctgaaatta
ttagagggcttatgtttacttggaagcttcgataagggtgagaaggagttacaaagtgga
gaccgagttactcaaggtctcagtgctgtgtggagcctgattttgctgaggcctcctctg
cgagaggactgcttgaaaattgctttgctgagtgcggttcattgctcagaggaagtgcga
atgaaggcaatacgactggtggcgaacaagctttatcccttgtcatccattgctcaacaa
atagaagattttgcccaggaaaggttgctctctacaataaatggggatggcaaagtgaaa
aaggatgctgaagtgtcaaccaatgggccgcagaaggattctgatttggaaaagccatca
aatgagctcatgtcagggagcactgtcagtaaagatatctccagtgatattcatcagtca
agcacgtcacccagcatgtcatccctttcaatccctgaggctcaacggtgcatgtcactt
tattttgctctctgtacaaagaagcattctcttttccgggaaatatttattctgtataaa
gatgcatcaaatgtggtaaagcaggctgtccaacgtcacatccctattctggttcgtact
atcggctcatcatctgaacttcttgaaattatctcagatcctccaggtggaagcgaaagc
ctgttgatgcaggttttgcatacattgactgatgggacaattccttctctggaattgata
tttactattaaaaagttgtatgattccaaattaaaggatgtagaaattctatttccaata
ttgccattcttgccgggagatgagatcttggtgatatttccccatcttgtgagtcttccc
caagacaaattccaagcagcacttgctcgtatactacagggatcatctaattcaggtcca
gtgctctctccagctgaagtcttaatagctattcatgggattgatcctgacaaagatgga
attcccttgaaaaaggttacagatgcatgtaatgcttgttttgagcaaaggcagatcttc
acccaacaagttcttgctaaagtcttgaatcaattggttgagcagattccccttccctta
ttgttcatgcgtacggtattacaagcaattggtgcttttccagcactggtggactttata
atggagatcctttctcgtcttataaccaaacagatatggaagtaccctaagttgtgggtt
gggttcttgaagtgtgcacagttgacacagcctcagtcattcaatgtgttgcttcagctt
cctccaccgcagctggaaaatgcattgaatagaatatctgccctcaaggctcctttggtc
gctcatgctagccaaccaaatatccggtcctcacttccaaggtcggttttggccgttttg
ggaattgccttggatactcagacttcaagtcaggcacagacaagtcaggcacaaacaagt
cagggtcagactggagatataagcaactcggagaaggaggctgtgacagagaaatctaag
gaagaatcatctgttgctagctga

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