Citrus sinensis (Valencia orange): 102608971
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Entry
102608971 CDS
T02983
Name
(RefSeq) vacuolar protein-sorting-associated protein 11 homolog
KO
K20179
vacuolar protein sorting-associated protein 11
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
102608971
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cit04131
]
102608971
Membrane trafficking [BR:
cit04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
102608971
Hops complex
102608971
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS11_N
PEP5_VPS11_N
TPR_PEP5_VPS11
VPS11_C
Clathrin
zf-C3H2C3
TPR_Vps41
OCRL_clath_bd
zf-C3HC4_2
zf_RING_Vps8_fungal
zf-RING_6
zf-RING_5
TPR_ELP1
Motif
Other DBs
NCBI-GeneID:
102608971
NCBI-ProteinID:
XP_006469505
LinkDB
All DBs
Position
2:complement(join(20679988..20680353,20681013..20682776,20682881..20683189,20683397..20683570,20683757..20683978))
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AA seq
944 aa
AA seq
DB search
MYQWRKFDFFEEKYGGKSTIPEEVSGNITYCSSGRGKVVIGCDDGAVSLLDRGLKFNFGF
QAHSSSVLFLQQLKQRNFLVTVGEDEQVSAQQSAVCLKVFDLDKMEPEGTSSTSPDCIGI
LRVFTSQFPEAKITSFLVLEEAPPILLIAIGLDNGCIYCIKGDIARERITRFKLQVDNQC
SVMGLGFRVDGQALQLFAVTPNSVILFSLQNQPPKRQFLDNIGCSTNSVAMSDRLELIIG
RPEAVYFYEVDGRGPCWAFEGEKKLLGWFRGYLLCVIADQRNSKNIFNVYDLKNRLIAHS
LVVKEVSHMLCEWGNIILVMTDKSVLCIGEKDMESKLDMLFKKNLYTVAINLVQSQQADA
AATAEVLRKYGDHLYSKQDYDEAMSQYILTIGHLEPSYVIQKFLDAQRIYNLTNYLEKLH
EKGFASKDHTTLLLNCYTKLKDVEKLNMFIKGEDGVGEHKFDVETAIRVCRAANYHEHAM
YVAKKAGKHELYLKILLEDLGRYDEALQYISSLDPSQAGVTVKEYGKILIEHKPMETIDI
LLRLCTEDGESTKRGASSSTYMSMLPSPVDFLNIFVHHPESLMDFLEKYTNKVKDSPAQV
EIHNTLLELYLSYDLNFPSISQLNDGVDLRLRSGSGLPKAEYNGEVTADGKDTYKGKDVL
ERREKGLRLLKTAWPSELEHPLYDVDLAIILCEMNAFKEGLLYLYEKLKLYKEVIACYTQ
AHDHEGLIACCKRLGDSGKGGDPSLWVDLLKYFGELGEDCSKEVKEVLTYIERDDILPPI
VVLQTLSRNPCLTLSVIKDYIARKLEQESKLIEGDRRAIENYQEDTLAMRKEIHDLRTNA
RIFQLSKCTACTFTLDLPAVHFMCMHSFHQRCLGDNEKECPECTPDYRAVMEMKRGLEQN
SKDQDRFFQQVKSSKDGFSVIAEYFGKGVISKTINGTASSSSGF
NT seq
2835 nt
NT seq
+upstream
nt +downstream
nt
atgtaccagtggaggaaattcgatttcttcgaggagaaatacggaggaaagagcacgatc
ccggaggaagttagtggaaacatcacgtactgctcaagtggcagaggaaaggtagtgatc
ggctgcgacgacggggccgtaagcctccttgatcgcggcctcaagttcaatttcggcttc
caagctcactcctcctccgtcctcttcctccagcagctcaagcaacgaaactttctggtg
acggttggtgaagatgagcaagtatcggcacagcaatcagctgtgtgtcttaaagttttc
gaccttgataaaatggaaccggagggaaccagctccacgagtcctgattgtattggaatt
ttgcgagtatttaccagtcagtttcctgaagccaagataacgtcatttctagtactagag
gaagctccgccaatactacttatagctattgggttagacaatggttgtatttattgtatt
aaaggggatattgcacgggagcgtatcacgcgtttcaagcttcaggtggataatcagtgc
tctgttatgggtttaggattcagagtggatggtcaagctcttcagttatttgctgtgacc
ccaaattcagtcatcttattcagtttgcagaaccaaccacctaagcggcagtttctagat
aacattggatgcagtaccaacagtgtagctatgagcgatcgcttggagttgattattggc
agacctgaggctgtgtacttttacgaagttgacggacgaggcccttgttgggcttttgaa
ggggagaagaaactccttgggtggttccgtggataccttttatgtgtcattgcagatcaa
agaaatagcaagaatattttcaatgtctatgacctgaagaatcgtttaatagcccacagt
ctagtggttaaggaagtttctcacatgctctgtgaatggggtaatataatacttgtaatg
actgacaagtcagttttgtgcattggggagaaggacatggagagcaagttagatatgctc
tttaagaaaaacctttatacagtagctataaatcttgtacagagtcagcaagctgatgcg
gctgcaactgctgaagtgctgaggaagtatggggatcatctatatagcaaacaagactac
gacgaagcaatgtcgcagtacattcttaccattggtcaccttgaaccttcatatgtaata
caaaagtttcttgatgcacaaaggatctacaaccttacaaattacttggagaagttacat
gaaaaggggtttgcttctaaagatcatactactcttttgttaaattgctacaccaaattg
aaagatgttgaaaaattgaatatgttcataaaaggtgaagatggtgtaggggaacataaa
tttgatgtggagactgctataagggtctgccgcgctgccaattaccatgagcatgccatg
tatgttgctaagaaggcagggaagcatgaattgtatttgaagattttacttgaagacctt
ggcaggtatgatgaagccttgcaatatatttcaagcctagacccaagtcaagctggggtg
actgtcaaagagtatggtaagattctcatagagcacaagcccatggagacaattgacata
cttctgaggctttgtactgaagacggggaatcgaccaaaagaggagcttcaagcagtacg
tacatgtccatgttgccatctcctgttgattttctcaacatttttgtccatcatcctgag
tctcttatggattttcttgaaaaatatactaacaaggtgaaagactcacctgctcaagta
gaaattcataacactctcttggaactctacttgtcctatgacttgaactttccatcaatc
tcacaactgaatgatggggtagatcttagacttagatcaggatcagggctgccgaaagca
gaatacaatggagaagtaactgctgatggtaaagatacatataaggggaaggatgttttg
gaaaggcgtgagaagggtttacgtttgctgaagactgcatggccttctgaactggaacat
ccactttatgatgttgatcttgctataattctttgtgaaatgaatgcatttaaggaaggg
ctactgtatttgtatgagaagttgaaactctataaagaggtgattgcttgctacacgcag
gcccatgaccatgagggactaattgcttgctgcaaaaggctgggggattcaggtaaagga
ggggatccttctctttgggtagatctgctgaaatattttggtgaacttggagaagattgc
tccaaagaagtgaaggaagttttgacttatattgaaagggatgacatcttgccacctatt
gttgttcttcaaactctgtccaggaatccttgtctcacactctctgtcataaaagattat
attgctcggaagctcgaacaggaatcaaagctaattgaaggggaccggcgagcaatagag
aattatcaggaagatacgttggctatgaggaaagaaattcatgatcttaggacaaatgcc
agaatctttcagctcagcaagtgcactgcttgcaccttcacccttgatctccccgctgta
cactttatgtgtatgcactctttccatcaacgctgccttggtgacaacgaaaaagaatgc
ccagagtgtactcctgattacagggctgttatggaaatgaagagaggcttggagcaaaat
tccaaagatcaagatcggtttttccagcaagtgaagagctcaaaggatggtttttctgta
attgctgaatattttggaaagggggtcattagcaaaactatcaatggcactgcgtcgtct
agcagtggtttctga
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