KEGG   Citrus sinensis (Valencia orange): 102609201
Entry
102609201         CDS       T02983                                 
Name
(RefSeq) protein RRP6-like 2 isoform X1
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
cit  Citrus sinensis (Valencia orange)
Pathway
cit03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:cit00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102609201
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cit03019]
    102609201
Messenger RNA biogenesis [BR:cit03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     102609201
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC PMC2NT
Other DBs
NCBI-GeneID: 102609201
NCBI-ProteinID: XP_052293305
LinkDB
Position
3:join(41073683..41074291,41074588..41074743,41075274..41075432,41075519..41075602,41076147..41076226,41076306..41076356,41077472..41077580,41077980..41078062,41078268..41078313,41078648..41078735,41078837..41079006,41079674..41079991,41080073..41080168,41080712..41081434)
AA seq 923 aa
MSDQDEQSRAQKAAQLTSPLSSSLSNLSSSSRSIPSNQDFHFFYNFPEFNQPVQEIANQS
QLLLQSIGSSEIFNQPINFPDEVDISDAYDWLVDVNDNVFERMDVSFDEFSKARGENGEG
DGNEGGFQLVYGKNKKKGDIVGGSAPASVKVKDRKEKSKVPFHVPTITKPQEEYKIVVNN
ANQPFQHVWLQKSEDSGRFIHPLDNLSVLDFVDKDIGDVEAVKPPSLEQTPFKLVEEVKD
LKELAAKLKSVDEFAVDLEHNQYRSFLGLTCLMQISTRTEDFVVDTLKLRVQVGPYLREV
FKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNA
NKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKR
SYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVL
PNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIQNSMQNAANFEAIAQKLKE
ERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGS
SVAELDRNGLGSFAHPGEAIASENKEASHISTLSSSGLSRDLNACKSPSARVTEAAVQAL
KKPNRGFGALLGNPKRKFGGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSE
PNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQ
NLGNLETANAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEE
PSGFLQFQPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDRAQKDDGT
KELSQGRRRSAFPATGNRSATFR
NT seq 2772 nt   +upstreamnt  +downstreamnt
atgagcgaccaagacgagcaatcgcgggctcagaaagccgcccagttaacaagtccgctc
tcatcttctctctcgaacctttcttcttcttcgagaagcatcccctctaatcaagatttc
catttcttctacaatttccctgaattcaatcaacccgtccaagaaatcgcgaaccaatcg
cagctcctcctacaatccatcggctcatcggagatttttaaccaaccgatcaattttcct
gacgaggttgacatctcggacgcctacgactggcttgtcgacgtaaacgacaacgttttc
gagcgtatggatgtttctttcgacgaatttagtaaagcaagaggggaaaatggggaaggc
gatggaaatgaaggtggctttcagttggtttatgggaagaacaagaagaagggcgacatt
gtgggtggctctgccccggccagtgtgaaagtgaaggacaggaaagagaaaagcaaggtg
ccgtttcatgtaccgactataacaaaaccgcaagaggagtacaagatcgttgtgaacaat
gcgaaccagccgtttcagcatgtttggttgcagaagagtgaggacagtggacgctttatc
catcctcttgacaatctttctgttttggattttgttgataaagatataggggatgtggaa
gctgtaaaacctccctcgttggagcagacaccattcaagcttgtggaagaagttaaagat
ttaaaggagctagctgctaaattgaagagcgtagatgagtttgcggtcgacttggaacat
aatcaatatcgatctttcctaggattgacttgcctgatgcaaatttccaccagaaccgaa
gattttgtggtagatacgttaaagcttcgcgttcaagttgggccatatcttagggaagtt
tttaaagatcctaccaagaaaaaggtgatgcatggagcagatcgagatattgtgtggctt
caacgggactttggcatatatttgtgcaatatgtttgacacaggacaggcctcaagagtc
ttgaaattggagagaaatagtttggagtatcttctacatcacttttgtggagttaatgcc
aacaaagaataccagaatgcagattggagagtacgtcctcttcccgacgagatgctgaga
tacgctagagaagatacacactatctgttgtatatatatgatataatgaaaatcaagttg
tcctcaatgcccaaggagtctgagaattctgatactcccctgacagaggtctacaagcgt
agttatgacgtatgcaggcagctgtatgagaaggagcttctgtcagaaaattcatatctc
cacatttatgggttgcagggggctggtctcaatgctcagcagcttgctgttgttgcgggt
ctttgtgaatggcgagatgttattgctcgtgcagatgatgaaagtactggttatgtattg
ccaaacagaactctgattgaaattgccaaacagttgcctactactgctgccaagttacgt
cgattgttgaaatcaaagcactcatatattgaacgctatatgggtccggtacttagcatc
atacaaaattctatgcaaaatgctgctaattttgaagccattgctcaaaaattgaaagag
gaacgtatggaagtggcatcagaagaaactgaagttttagttcttgatacttcctcaaac
ttgaaaattccaaatgttggaagggagagtgttgatggtgttgatgcattagttggtacc
acgatgcctcacccaccagcttacacccagctgaaacaagagcctccaaaggttggaagc
agtgtcgcagaacttgacagaaatggactagggtcttttgcgcatcctggagaagcaatt
gcttcagaaaataaagaagctagtcatatttcaacactttccagctctggtctaagtaga
gacttgaatgcttgcaagtcaccttcagcaagggttactgaagctgctgttcaggctcta
aagaagcctaaccgtggttttggagcactgctgggtaacccaaagagaaagtttggtggc
gaaaaaaaggacaaggaagctatgaaactagagcagattaaatcctcagtcaatcttcca
ttccactcaatttttgcaagagatgaacagttaaaaccagttgatgtgatgaagtctgaa
ccaaataagcctgaccttccatttccttcatcttttggtagtggggaacaaacgaaacca
atcatcgaggaatccaatagagttacagtagtttcccaatcagaagaacccgctccggct
gctaggcctgatacagaagatattattacgttggaagatgatatagatgaagaggaacaa
aaccttggtaatttggaaactgcaaatgctcccggagaggacggttctgcagggtctgct
ttggaaatgggtaaacaagatgagaccatgtctctctctgatttatcaactagtttccag
gagtgcttccactctgctaacaataatagaaaacctggaaagcctgagagatctgaagaa
cctagtggttttttgcagtttcagccgtttgacttcgaagcagctaggaaacagatcgag
tttggagaagatgccaaagaaaaatcagctggggttgatggaaacaaaagaaaaccagtg
aactctggagataagaaaaaagtttcagctgtagatcgagctcaaaaagatgatggaacg
aaagaactgtcacaaggtagacgacgttctgcttttcctgcaactggaaatcgaagtgca
acatttcgctga

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