Citrus sinensis (Valencia orange): 102609234
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Entry
102609234 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20 isoform X1
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102609234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102609234
03009 Ribosome biogenesis [BR:
cit03009
]
102609234
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102609234
Spliceosome [BR:
cit03041
]
Complex A
U1 snRNP components
U1 related factors
102609234
Complex B
102609234
Ribosome biogenesis [BR:
cit03009
]
Eukaryotic type
Pre-60S particles
Helicases
102609234
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102609234
NCBI-ProteinID:
XP_006466041
UniProt:
A0A067FPA9
LinkDB
All DBs
Position
7:complement(join(6716073..6716134,6716291..6716521,6716988..6717214,6717321..6717406,6717684..6717776,6718085..6718239,6718410..6718571,6718684..6718863,6719374..6719639,6720245..6720300))
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AA seq
505 aa
AA seq
DB search
MSRYDSRSADPSSYRDRRSDSGFGGASSYGSSVRTSSSKRDYDGAESPRKLDLDGLTPFE
KNFYVESPSVAAMSEREVEEYRQQREITVEGRDVPKPVKSFRDVGFPDYVMQEISKAGFF
EPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPAIVHVNAQPFLAPGDGPIVLVLAP
TRELAVQIQQESTKFGASSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMLESH
NTNLRRVTYLVLDEADRMLDMGFEPQIKKILSQIRPDRQTLYWSATWPKEVEHLARQYLY
NPYKVIIGSPDLKANHAIRQHVDIVSESQKYNKLVKLLEDIMDGSRILIFMDTKKGCDQI
TRQLRMDGWPALSIHGDKSQAERDWVLSEFKAGKSPIMTATDVAARGLDVKDVKYVINYD
FPGSLEDYVHRIGRTGRAGAKGTAYTFFTAANARFAKELITILEEAGQKVSPELAAMGRG
APPSSAGHGGFRDRGRGYGGGRHWS
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgctatgacagccgctccgccgaccccagctcttaccgtgaccgccgaagtgat
tcagggtttggtggggcttccagctatggcagctcggtccgtacctcatcgagcaagagg
gattatgatggtgctgagtcacctaggaagttggatttggatggattgactccttttgag
aagaacttctatgttgagtcaccgtcagtggctgcaatgtcggagagggaagtcgaggag
tatcgacagcagagggaaatcacagttgaaggtcgcgatgttccaaaacctgtcaagagt
ttccgtgatgtcggttttccagattatgttatgcaagaaatatcaaaagctggctttttt
gaacccacacctatacaagctcagggatggccaatggctttgaaaggtcgtgatctcatt
ggaattgctgaaacaggctcaggaaaaactctggcttatctcttgcctgctattgtccat
gttaatgcccagccatttttagctcctggagatggcccaattgtgctagttctagctcca
actcgtgaacttgctgttcaaatacaacaagaatctactaaatttggtgcatcatcaaag
attaaaagtacttgcatctatggcggagttccaaagggacctcaagttcgtgatctccag
aaaggtgttgaaattgtcatcgccaccccagggaggttgattgatatgctggagtcacat
aataccaacttgcgaagggttacttaccttgttttggatgaggccgatcgaatgctggac
atggggtttgagcctcaaattaaaaaaattctctcccagatccgtccggatcgtcaaact
ttatattggagtgctacttggcctaaggaggttgagcacctcgcaaggcaatatctttac
aacccatacaaagtgattataggttctccagatttaaaagctaaccatgctatacgtcaa
catgtcgacattgtttctgagagccagaaatataacaagttagtaaagttgctggaggat
attatggatggtagccgaatacttattttcatggataccaagaaaggttgtgatcaaatt
actaggcagctccgcatggatggatggcctgcgctctcaatccatggagataaaagtcaa
gcagaaagggattgggtcctctcagagttcaaagctgggaagagtccaataatgactgct
acagatgttgctgctcgtggtttagatgtgaaggatgtaaaatatgtgatcaattatgac
tttccgggatctcttgaggattatgtacatcgcattggtcgaaccggaagggctggggca
aagggaacagcctacactttctttacggctgctaatgctagatttgcaaaggaactgatc
accatcctggaagaagctggtcagaaggtcagtcccgaattagcagcaatggggcgtggt
gcacctccatcatcagcaggtcatggaggtttccgtgatcgagggaggggttatgggggt
ggtcgccactggagctaa
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