Citrus sinensis (Valencia orange): 102609265
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Entry
102609265 CDS
T02983
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
KO
K12835
ATP-dependent RNA helicase DDX42 [EC:
5.6.2.7
]
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102609265
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cit03041
]
102609265
Enzymes [BR:
cit01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102609265
Spliceosome [BR:
cit03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102609265
Complex B
102609265
Complex C
U2 SnRNP specific factors
102609265
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
VP4_helical
CMS1
Motif
Other DBs
NCBI-GeneID:
102609265
NCBI-ProteinID:
XP_006492349
UniProt:
A0A067H526
LinkDB
All DBs
Position
3:join(46063587..46064178,46064696..46065924,46066574..46066613,46066846..46067302,46067405..46067456)
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AA seq
789 aa
AA seq
DB search
MTKRKFGFEGFNINRQTSYSFEQSQAPQRLYVPPSSRYSHDNYEDTDLDNIDYEDNDAAK
AANDTGNGAEKEEIDPLDAFMEGIHEEMRAAPPPKPKEKLERYKDDDEEDPMESFLMAKK
DVGLTLAADALRAGYDSDEEVYAAAKAVDAGMLDYDSDDNPVVVEKKKIEPIPALDHSLI
DYEPFNKDFYQDSASISGMSEQDVMEYKKSLAIRVSGFDVPRPVKTFEDCGFSTQLMHAI
SKQGYEKPTSIQCQALPIILSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELQKEEGPI
GVICAPTRELAHQIYLETKKFAKSHGIRVSAVYGGMSKLDQFKELKAGCEIVIATPGRLI
DMLKMKALTMSRVTYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPRKVEKL
AREILSDPVRVTVGEVGMANEDITQVVHVIPSDAEKLPWLLEKLPGMIDDGDVLVFASKK
TTVDEIESQLAQKGFKAAALHGDKDQASRMEILQKFKSGVYHVLIATDVAARGLDIKSIK
SVVNFDIARDMDMHVHRIGRTGRAGDKDGTAYTLVTQKEARFAGELVNSLIAAGQNVSME
LMDLAMKDGRFRSKRDARKGGGKKGKGRGGAGRGVRGVDFGLGIGYTPESNNTSSQSVPS
RSAAVNSLKTGMMTQFRSNFVAASSNTPSEGFNNSASAYANKRPALRGFVSGGSIGGDVN
GTQTTGLTGFVSGGSIGGEMSGTQTTSSFSPVSGVNSSRVNYGESAHQKNSESSRDRPRE
RRRPSGWDR
NT seq
2370 nt
NT seq
+upstream
nt +downstream
nt
atgacgaagagaaaatttggattcgaaggattcaatataaaccgccaaacatcctacagt
tttgagcaatctcaagccccgcaacgtctctacgtccctccctcaagtcgctacagccac
gacaattatgaagatactgaccttgacaatatcgattacgaagataatgatgccgccaag
gctgctaacgacactgggaatggtgctgaaaaagaagaaattgaccctctggacgccttc
atggaagggatacacgaggagatgagagccgcgccgccgccgaagcccaaggaaaagtta
gagagatataaagacgacgacgaggaggatccgatggagagtttcttgatggcgaagaag
gacgtagggcttactttggcggcggacgcgctgcgtgcggggtatgattccgatgaggag
gtttacgctgcagcaaaagccgttgatgcggggatgttggattatgattccgatgataat
ccggtggtagttgagaagaagaaaattgagccgattcctgcactggatcatagtttgatt
gattacgagcccttcaataaggacttttaccaagacagtgcgtcaatttcaggcatgagc
gagcaagatgttatggaatataagaagagcctggctattcgagtctctggttttgatgtc
ccaagaccagttaagacatttgaagactgtggtttttcaacacaactaatgcatgctata
tcaaagcaagggtatgaaaagcccacatcaatacagtgccaagcgttaccaatcatcctc
tctggtagagacataattggtatagcaaaaactggatctggtaaaactgctgcttttgtg
cttcccatgattgtccatataatggatcagcctgagcttcagaaggaggagggcccaatt
ggtgtgatatgtgcacctactagggagttagcacaccaaatatacttggagactaagaaa
tttgcaaaatcacatgggatacgtgtctctgctgtctatggtggaatgtccaaacttgat
cagttcaaagaactcaaggcaggatgtgagatagtcattgccacacctgggagactgata
gatatgctaaagatgaaggctctaacaatgtcgagagtgacttatttggtgcttgatgag
gctgatcgtatgtttgaccttggatttgagccacagataaggtccatagttggtcaaata
aggccagaccgccagacattgctcttttcggcaacaatgcctcgcaaagtcgaaaagtta
gctagggaaattctttctgatcctgtaagagttactgttggggaggtaggaatggctaac
gaggatataactcaggttgttcatgttattccttccgacgcagagaagttgccttggctt
cttgaaaagctacctggaatgattgacgatggtgatgttttagtttttgcttccaaaaaa
accactgtggatgagattgaatctcagttggctcagaaggggtttaaggcagcagctctt
cacggtgataaagatcaggcatctaggatggaaattttgcaaaaattcaaatctggggtc
taccatgtgcttattgcaactgatgttgctgctcgtggtcttgacatcaagtcgattaag
tctgtggtaaattttgacattgcgcgagatatggacatgcatgttcatcgtattggtagg
acaggtcgtgctggtgacaaagatgggactgcttatactcttgtaactcagaaagaggca
aggtttgcaggtgaattggttaatagtttgattgctgctggtcagaatgtctccatggaa
ctgatggatcttgctatgaaggatgggaggttcaggtccaagcgtgatgcaagaaaagga
ggtgggaagaagggaaaaggaaggggtggtgctggtcgaggtgtgcgtggagttgatttt
ggtctgggtataggatatactccagaatccaataatacttcatctcaaagtgtcccaagt
cggtctgctgctgttaattcactgaagacaggaatgatgacacaattcaggagtaacttt
gttgctgcatcatctaacactccaagtgaaggcttcaacaacagtgcaagcgcatatgcc
aacaagcgaccagcactacgtggatttgtgtctggtggttcaattggtggagatgtaaat
ggaactcagacaacgggcttaactggatttgtatcaggaggttcaatcggtggagaaatg
agtggaactcagacaaccagctccttcagtcctgtctctggagtgaatagctctcgtgta
aattatggggaaagcgcccatcagaagaactcggaaagctccagagatagacctcgagaa
aggcggaggccctctggttgggaccgttag
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