Citrus sinensis (Valencia orange): 102609283
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Entry
102609283 CDS
T02983
Name
(RefSeq) probable small nuclear ribonucleoprotein F
KO
K11098
small nuclear ribonucleoprotein F
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102609283
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cit03019
]
102609283
03041 Spliceosome [BR:
cit03041
]
102609283
03032 DNA replication proteins [BR:
cit03032
]
102609283
Messenger RNA biogenesis [BR:
cit03019
]
Eukaryotic type
mRNA processing factors
3' end processing
U7-dependent histone pre-mRNA processing factors
102609283
Spliceosome [BR:
cit03041
]
Complex A
U1 snRNP components
Sm proteins
102609283
U2 snRNP components
102609283
Complex B
U1 snRNP components
102609283
U4/U6.U5 tri-snRNP components
102609283
Complex C
U2 snRNP components
102609283
DNA replication proteins [BR:
cit03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
102609283
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
102609283
NCBI-ProteinID:
XP_006474184
LinkDB
All DBs
Position
9:complement(join(32269510..32269579,32271285..32271349,32271515..32271552,32271631..32271718,32272091..32272096))
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AA seq
88 aa
AA seq
DB search
MATIPVNPKPFLNNLTGKTVIVKLKWGMEYKGFLASVDSYMNLQLGNAEEYVDGQFSGNL
GEILIRCNNVLYLRGVPEDEEIEDADRD
NT seq
267 nt
NT seq
+upstream
nt +downstream
nt
atggctacgataccggttaacccgaaacctttcttgaataacttgactggaaagactgtc
attgttaaactcaagtggggaatggagtataaaggtttccttgcctcagtggattcttac
atgaacttgcagctaggaaatgctgaagaatatgttgatggacagttctctggaaacctt
ggagagatcttgatcagatgcaacaatgttctctatctccgcggggttccagaggatgaa
gaaatagaggatgctgatcgagactaa
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