Citrus sinensis (Valencia orange): 102609330
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Entry
102609330 CDS
T02983
Name
(RefSeq) SWI/SNF complex subunit SWI3D isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
cit
Citrus sinensis (Valencia orange)
Pathway
cit03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cit00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
102609330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cit03021
]
102609330
03036 Chromosome and associated proteins [BR:
cit03036
]
102609330
Transcription machinery [BR:
cit03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
102609330
Chromosome and associated proteins [BR:
cit03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
102609330
PBAF complex
102609330
GBAF(ncBAF) complex
102609330
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
102609330
NCBI-ProteinID:
XP_006487157
LinkDB
All DBs
Position
8:join(4831484..4831949,4833418..4833968,4834326..4834991,4835780..4835946,4836023..4836735,4837181..4837371,4837456..4837818)
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AA seq
1038 aa
AA seq
DB search
MEEKRREAGAQPAATSSAAAGAESAASEPASSRRRAGAHKRKASALSATNASSTPSKRMT
REKNLVAHTPIYNHNGPLTRARQGPTTLAAAAAFGGAPGSAGGKLEAARDDSTFEAIEEL
NKASEEWAALEAKIEADFEAIRSRDRNVHVVPTHCGWFSWTKIHPLEEQALPAFFNGKSQ
DRTPDIYMEIRNWIMKKFHSNPNTQIELKDLSELEVGSLDARQEVMEFLDYWGLINFHPF
PHVESSVANSDGDRMTDADSDAAAKKGSLLEKLYHFEEIKAGPPVAPMPSITFPAVPSGL
FPESAIAEELAKLEGPAVEYHCNSCSADCSRKRYHCQKQADFDLCTDCFNNGKFGSDMSS
SDFILMVPGEAAGVSGGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQM
PIEDMFLDCDDDVDGNLKETTDDAPTNGDTSASKDVAEASESKTGAVEGQTQTSPMETSK
PEDASELKICEDTSKPKDESDVKVDEQMLKSEDTSEGKVGQETGENIALKALREAFEAVG
YVPTHETPQSFAEVGNPVMALAAFLTLLGGPDLTTASARSSLKSISGNSPAMQLAAKHCF
ILEDPPGDKKEVAHSESIVAEMADRDIQKDETLEDINVKECNSASVLDERDLTNDHGDKK
IEDSVPEEKRHSASLNEKPSEKLNGASGPANQDTPEKDEPGDLNELSNPKSPKDNQPSIV
EESNDLPSKVLQSSQKESGEGSSGEPAPPVDVEKDNSLLSDSLPSGKNEPDQRVLSNSVA
EPSPPSKLTNDVDMVSDPQPLENNEPEKQITSSTEKPSESTEAPKDVEMVSTSLPSEINE
PQQTDSITGTETARVEDQNRDGQDEKHDSKETKNDQYIDKLKHAAVTALSAAAVKAKLLA
CQEEDQIRQLATSLIEKQLQKLEAKLAFFNEMDNVTMRVREQLERSRQRLYQERALIIQA
RLGPSRVMQPSVPANRNPMTFANSVARPPMSMTSPRPPISRPMVPQSSTPSNPFGSTTTA
GSSIRPSSQDNLSSVGMK
NT seq
3117 nt
NT seq
+upstream
nt +downstream
nt
atggaagagaaacgccgggaagccggagcgcaaccggcggctacgagctcggccgcagct
ggagccgagtcagcggcatccgagccggcttcgtctcggcgccgagccggagcgcacaaa
aggaaagcctcggcgctctcagcgactaacgcttcatccacgccgtcgaaacgcatgact
cgtgagaagaatttagttgctcacactccgatctacaaccataacgggccgttgacgagg
gctcgccagggccccaccactctggccgccgccgcggcgtttggtggagctccgggttcg
gctggcgggaagctggaggcggcgcgtgatgactcgacgtttgaggcgattgaggagcta
aacaaagcgagtgaagagtgggcagcattggaggcgaaaatagaagcggattttgaggcg
attagatctcgtgataggaatgttcatgttgtacctacacattgtggttggttttcttgg
acaaaaattcaccccctcgaggagcaagcattgcctgcatttttcaatgggaagtctcag
gaccgaactcctgatatctatatggagatacgcaattggattatgaagaaatttcattca
aatccaaacactcagatcgaattgaaagatttatcagaacttgaagttggatccttggat
gctaggcaggaggtgatggagttcttggactattggggtttgattaatttccatccattc
ccacatgtagaatccagtgtggcaaattctgatggtgacaggatgaccgatgctgatagt
gatgcagcagcaaaaaagggttccttgcttgaaaaattgtatcactttgaagaaattaaa
gcaggtcctcctgttgctccaatgcctagcataacatttcctgctgtgccatctgggttg
tttccagagtctgcaattgctgaagagttggcgaaattagagggaccagctgttgagtac
cattgcaattcttgctcggctgattgctctcgcaaacgctaccattgtcaaaagcaggct
gattttgatttatgtaccgattgcttcaataatggaaagtttggctctgacatgtcatcg
tcggatttcattctcatggtaccaggtgaagcagctggtgtaagtggtggaaagtggaca
gatcaggagacccttctcctccttgaagcattggaactttataaagaaaactggaatgag
attgctgagcatgttgccactaaaaccaaagcccaatgtatattgcattttgttcaaatg
ccaattgaggatatgtttcttgattgcgatgatgatgtagatggcaatttgaaagaaact
acagatgatgctccaacaaatggtgatacttctgcatctaaagatgttgctgaagcatca
gagagtaagactggtgctgttgagggtcagacccagacttctccaatggaaacttcaaaa
ccagaagatgctagtgaattgaaaatatgtgaagacacttcaaagcctaaagatgaaagt
gacgttaaagttgatgagcaaatgttaaaatcagaagataccagtgaggggaaggttggt
caggagactggtgaaaacattgcattgaaggctcttagggaagcatttgaagctgttggt
tatgttccaacacacgaaaccccacaatcctttgctgaagttggaaaccctgtaatggca
ttggcagcattcttgacactattggggggacctgatttgactactgcttctgctcgtagt
tctttgaaatctatatctggcaattctcctgcaatgcagctggctgcgaagcactgcttc
attttggaagatccacctggtgataagaaggaagtggctcattctgagagtattgttgct
gaaatggctgatcgagatattcaaaaagatgaaaccctggaagacataaacgtcaaggag
tgtaactctgcctcagtgttggatgaaagagatttgacaaatgatcatggagacaagaaa
attgaagattctgttccagaagaaaagagacactcagcttccttgaatgaaaaaccctca
gagaaattaaatggtgcttcaggaccagcgaaccaagatactcctgagaaagatgaacct
ggtgatttgaatgaactaagcaatccaaaatctccaaaggacaatcaaccaagtattgtg
gaggaatcaaatgatttaccatccaaggttctgcaaagttctcagaaggagtcaggagag
gggagttcaggagagcctgccccacctgtagatgtagaaaaggataatagtctgttgtct
gattctcttccttcaggaaagaatgagcctgatcagcgagttttatcaaattcagttgca
gagccatctccaccttccaaattaactaacgatgtggatatggtttctgatcctcaaccc
ttagagaataatgaacctgagaaacaaattacgagttccacagaaaagccctccgaatcc
acggaggcacccaaggatgtagaaatggtgtctacttcactgccctcagaaataaatgaa
cctcaacagacagactcgataactggaactgaaacagctagagttgaggatcaaaataga
gatggccaagatgagaagcatgactctaaagagacgaaaaatgaccaatacattgataaa
ttgaagcatgcagcagttacggcactttccgcagcagcagtgaaggcaaaacttcttgct
tgccaggaagaggatcaaatccgacaacttgctacatcattgattgagaagcagttgcaa
aagttggaagccaagctagctttcttcaatgagatggataatgtgactatgagggtaaga
gagcaattggagaggtcaagacagaggctgtaccaggaacgagcacttataattcaagct
cgacttggcccatccagagttatgcaaccatcagtgcctgccaatagaaatccaatgacc
tttgctaactcagttgcaagacctcctatgagcatgacctccccaaggccaccaatttca
agaccaatggtgcctcaatcgtctaccccatccaacccatttggatccacaacaacggcg
ggaagttcaattcggccttccagccaggacaacctttcttcagttgggatgaagtaa
DBGET
integrated database retrieval system
